Gene : Glyma.05G031800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12565//PTHR12565:SF143 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  318
Name:  ? Glyma.05G031800 Secondary Identifier:  ? PAC:30526928
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G031800 0.5kb upstream 0.5kb upstream 4226 true Chr05: 2759749-2763974 Glycine max
Glyma.05G031800 0.5kb upstream 0.5kb upstream 500 false Chr05: 2759749-2760248 Glycine max
Glyma.05G031800 0.5kb downstream 0.5kb downstream 4226 true Chr05: 2760249-2764474 Glycine max
Glyma.05G031800 0.5kb downstream 0.5kb downstream 500 false Chr05: 2763975-2764474 Glycine max
Glyma.05G031800 1.0kb upstream 1.0kb upstream 4726 true Chr05: 2759249-2763974 Glycine max
Glyma.05G031800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2759249-2760248 Glycine max
Glyma.05G031800 1.0kb downstream 1.0kb downstream 4726 true Chr05: 2760249-2764974 Glycine max
Glyma.05G031800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2763975-2764974 Glycine max
Glyma.05G031800 2.0kb upstream 2.0kb upstream 5726 true Chr05: 2758249-2763974 Glycine max
Glyma.05G031800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2758249-2760248 Glycine max
Glyma.05G031800 2.0kb downstream 2.0kb downstream 5726 true Chr05: 2760249-2765974 Glycine max
Glyma.05G031800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2763975-2765974 Glycine max
Glyma.05G031800 5.0kb upstream 5.0kb upstream 8726 true Chr05: 2755249-2763974 Glycine max
Glyma.05G031800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2755249-2760248 Glycine max
Glyma.05G031800 5.0kb downstream 5.0kb downstream 8726 true Chr05: 2760249-2768974 Glycine max
Glyma.05G031800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2763975-2768974 Glycine max
Glyma.05G031800 10.0kb upstream 10.0kb upstream 13726 true Chr05: 2750249-2763974 Glycine max
Glyma.05G031800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2750249-2760248 Glycine max
Glyma.05G031800 10.0kb downstream 10.0kb downstream 13726 true Chr05: 2760249-2773974 Glycine max
Glyma.05G031800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2763975-2773974 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314556 5265 Fabidae View MSA
124066126 5270 Rosid View MSA
123750840 5271 Pentapetalae View MSA
122787869 5272 Eudicot View MSA
122041891 5273 Angiosperm View MSA
121350038 5274 Embryophyte View MSA
123381551 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0597 0.0 35.818    
cufflinks 14.0692 0.0 38.3702   High
cufflinks 8.50715 0.0 24.2992    
cufflinks 13.2827 0.0 36.3444   High
cufflinks 7.819 0.0 22.5263    
cufflinks 7.10319 0.0 20.7672   Low
cufflinks 8.0483 0.0 23.144    
cufflinks 12.4314 0.0 34.1563    
cufflinks 8.52929 0.0 24.3332    
cufflinks 2.613        
cufflinks 0.48       Low
cufflinks 3.603        
cufflinks 1.955        
cufflinks 1.922        
cufflinks 0.512       Low
cufflinks 3.253        
cufflinks 1.332        
cufflinks 4.76       High
cufflinks 4.166        
cufflinks 4.05        
cufflinks 0.347       Low
cufflinks 4.255        
cufflinks 3.385        
cufflinks 0.86        
cufflinks 3.624        
cufflinks 0.901        

0 Strain