Gene : Glyma.05G027600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23042:SF51 - TRANSCRIPTION FACTOR BHLH47 Genomic Order:  276
Name:  ? Glyma.05G027600 Secondary Identifier:  ? PAC:30526495
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G027600 0.5kb upstream 0.5kb upstream 3223 true Chr05: 2403662-2406884 Glycine max
Glyma.05G027600 0.5kb upstream 0.5kb upstream 500 false Chr05: 2403662-2404161 Glycine max
Glyma.05G027600 0.5kb downstream 0.5kb downstream 3223 true Chr05: 2404162-2407384 Glycine max
Glyma.05G027600 0.5kb downstream 0.5kb downstream 500 false Chr05: 2406885-2407384 Glycine max
Glyma.05G027600 1.0kb upstream 1.0kb upstream 3723 true Chr05: 2403162-2406884 Glycine max
Glyma.05G027600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2403162-2404161 Glycine max
Glyma.05G027600 1.0kb downstream 1.0kb downstream 3723 true Chr05: 2404162-2407884 Glycine max
Glyma.05G027600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2406885-2407884 Glycine max
Glyma.05G027600 2.0kb upstream 2.0kb upstream 4723 true Chr05: 2402162-2406884 Glycine max
Glyma.05G027600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2402162-2404161 Glycine max
Glyma.05G027600 2.0kb downstream 2.0kb downstream 4723 true Chr05: 2404162-2408884 Glycine max
Glyma.05G027600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2406885-2408884 Glycine max
Glyma.05G027600 5.0kb upstream 5.0kb upstream 7723 true Chr05: 2399162-2406884 Glycine max
Glyma.05G027600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2399162-2404161 Glycine max
Glyma.05G027600 5.0kb downstream 5.0kb downstream 7723 true Chr05: 2404162-2411884 Glycine max
Glyma.05G027600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2406885-2411884 Glycine max
Glyma.05G027600 10.0kb upstream 10.0kb upstream 12723 true Chr05: 2394162-2406884 Glycine max
Glyma.05G027600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2394162-2404161 Glycine max
Glyma.05G027600 10.0kb downstream 10.0kb downstream 12723 true Chr05: 2404162-2416884 Glycine max
Glyma.05G027600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2406885-2416884 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308621 5265 Fabidae View MSA
124071212 5270 Rosid View MSA
123743361 5271 Pentapetalae View MSA
122787264 5272 Eudicot View MSA
122043647 5273 Angiosperm View MSA
121351586 5274 Embryophyte View MSA
123427389 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.34457 0.0 20.8357    
cufflinks 5.37482 0.0 15.7857    
cufflinks 13.6558 0.0 36.7952   High
cufflinks 7.87735 0.0 22.097    
cufflinks 5.56329 0.0 16.3267    
cufflinks 6.76362 0.0 19.3306    
cufflinks 7.2003 0.0 20.4901    
cufflinks 6.54213 0.0 18.7417    
cufflinks 5.85181 0.0 17.0042    
cufflinks 2.647       Low
cufflinks 7.206     High High
cufflinks 6.732        
cufflinks 2.917       Low
cufflinks 2.114       Low
cufflinks 4.575        
cufflinks 5.611        
cufflinks 3.74        
cufflinks 5.606        
cufflinks 3.746        
cufflinks 6.857        
cufflinks 5.119        
cufflinks 6.823        
cufflinks 6.371        
cufflinks 7.993     High High
cufflinks 6.492        
cufflinks 2.923       Low

0 Strain