Gene : Glyma.05G027700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12300:SF52 - HVA22-LIKE PROTEIN A-RELATED Genomic Order:  277
Name:  ? Glyma.05G027700 Secondary Identifier:  ? PAC:30527514
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G027700 0.5kb upstream 0.5kb upstream 2759 true Chr05: 2407432-2410190 Glycine max
Glyma.05G027700 0.5kb upstream 0.5kb upstream 500 false Chr05: 2407432-2407931 Glycine max
Glyma.05G027700 0.5kb downstream 0.5kb downstream 2759 true Chr05: 2407932-2410690 Glycine max
Glyma.05G027700 0.5kb downstream 0.5kb downstream 500 false Chr05: 2410191-2410690 Glycine max
Glyma.05G027700 1.0kb upstream 1.0kb upstream 3259 true Chr05: 2406932-2410190 Glycine max
Glyma.05G027700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2406932-2407931 Glycine max
Glyma.05G027700 1.0kb downstream 1.0kb downstream 3259 true Chr05: 2407932-2411190 Glycine max
Glyma.05G027700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2410191-2411190 Glycine max
Glyma.05G027700 2.0kb upstream 2.0kb upstream 4259 true Chr05: 2405932-2410190 Glycine max
Glyma.05G027700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2405932-2407931 Glycine max
Glyma.05G027700 2.0kb downstream 2.0kb downstream 4259 true Chr05: 2407932-2412190 Glycine max
Glyma.05G027700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2410191-2412190 Glycine max
Glyma.05G027700 5.0kb upstream 5.0kb upstream 7259 true Chr05: 2402932-2410190 Glycine max
Glyma.05G027700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2402932-2407931 Glycine max
Glyma.05G027700 5.0kb downstream 5.0kb downstream 7259 true Chr05: 2407932-2415190 Glycine max
Glyma.05G027700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2410191-2415190 Glycine max
Glyma.05G027700 10.0kb upstream 10.0kb upstream 12259 true Chr05: 2397932-2410190 Glycine max
Glyma.05G027700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2397932-2407931 Glycine max
Glyma.05G027700 10.0kb downstream 10.0kb downstream 12259 true Chr05: 2407932-2420190 Glycine max
Glyma.05G027700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2410191-2420190 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304250 5265 Fabidae View MSA
124065574 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.10778 0.0 26.5478   Low
cufflinks 36.3566 0.0 97.0287 High  
cufflinks 10.5909 0.0 30.1191   Low
cufflinks 58.3568 0.0 158.203 High  
cufflinks 24.972 0.0 66.9887 High  
cufflinks 36.1988 0.0 96.5981 High  
cufflinks 90.2931 0.0 253.166 High High
cufflinks 51.8065 0.0 139.617 High  
cufflinks 25.0558 0.0 67.1322 High  
cufflinks 20.086     High High
cufflinks 1.071       Low
cufflinks 6.726        
cufflinks 9.462     High  
cufflinks 10.513     High  
cufflinks 2.559        
cufflinks 7.973     High  
cufflinks 5.533        
cufflinks 10.425     High  
cufflinks 11.155     High  
cufflinks 7.503     High  
cufflinks 2.057       Low
cufflinks 7.951     High  
cufflinks 10.966     High  
cufflinks 0.929       Low
cufflinks 8.34     High  
cufflinks 2.983        

0 Strain