Gene : Glyma.05G028000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11831//PTHR11831:SF13 - 30S 40S RIBOSOMAL PROTEIN Genomic Order:  280
Name:  ? Glyma.05G028000 Secondary Identifier:  ? PAC:30524922
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G028000 0.5kb upstream 0.5kb upstream 2127 true Chr05: 2419802-2421928 Glycine max
Glyma.05G028000 0.5kb upstream 0.5kb upstream 500 false Chr05: 2419802-2420301 Glycine max
Glyma.05G028000 0.5kb downstream 0.5kb downstream 2127 true Chr05: 2420302-2422428 Glycine max
Glyma.05G028000 0.5kb downstream 0.5kb downstream 500 false Chr05: 2421929-2422428 Glycine max
Glyma.05G028000 1.0kb upstream 1.0kb upstream 2627 true Chr05: 2419302-2421928 Glycine max
Glyma.05G028000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2419302-2420301 Glycine max
Glyma.05G028000 1.0kb downstream 1.0kb downstream 2627 true Chr05: 2420302-2422928 Glycine max
Glyma.05G028000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2421929-2422928 Glycine max
Glyma.05G028000 2.0kb upstream 2.0kb upstream 3627 true Chr05: 2418302-2421928 Glycine max
Glyma.05G028000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2418302-2420301 Glycine max
Glyma.05G028000 2.0kb downstream 2.0kb downstream 3627 true Chr05: 2420302-2423928 Glycine max
Glyma.05G028000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2421929-2423928 Glycine max
Glyma.05G028000 5.0kb upstream 5.0kb upstream 6627 true Chr05: 2415302-2421928 Glycine max
Glyma.05G028000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2415302-2420301 Glycine max
Glyma.05G028000 5.0kb downstream 5.0kb downstream 6627 true Chr05: 2420302-2426928 Glycine max
Glyma.05G028000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2421929-2426928 Glycine max
Glyma.05G028000 10.0kb upstream 10.0kb upstream 11627 true Chr05: 2410302-2421928 Glycine max
Glyma.05G028000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2410302-2420301 Glycine max
Glyma.05G028000 10.0kb downstream 10.0kb downstream 11627 true Chr05: 2420302-2431928 Glycine max
Glyma.05G028000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2421929-2431928 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301717 5265 Fabidae View MSA
124071399 5270 Rosid View MSA
123748066 5271 Pentapetalae View MSA
122790013 5272 Eudicot View MSA
122042868 5273 Angiosperm View MSA
121345250 5274 Embryophyte View MSA
123426931 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 106.512 0.0 311.323 High  
cufflinks 141.678 0.0 431.032 High  
cufflinks 53.4969 0.0 145.219 High Low
cufflinks 86.7584 0.0 246.498 High  
cufflinks 254.909 0.0 880.871 High High
cufflinks 215.7 0.0 713.383 High  
cufflinks 305.236 0.0 1097.06 High High
cufflinks 130.309 0.0 392.47 High  
cufflinks 155.565 0.0 483.513 High  
cufflinks 77.331     High  
cufflinks 22.403     High Low
cufflinks 49.871     High  
cufflinks 225.17     High High
cufflinks 351.958     High High
cufflinks 17.36     High Low
cufflinks 56.507     High  
cufflinks 50.918     High  
cufflinks 54.163     High  
cufflinks 95.389     High  
cufflinks 39.583     High  
cufflinks 36.705     High  
cufflinks 42.674     High  
cufflinks 77.268     High  
cufflinks 29.366     High  
cufflinks 47.984     High  
cufflinks 48.299     High  

0 Strain