Gene : Glyma.05G025700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11945:SF156 - MADS-BOX PROTEIN-RELATED Genomic Order:  257
Name:  ? Glyma.05G025700 Secondary Identifier:  ? PAC:30526955
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G025700 0.5kb upstream 0.5kb upstream 6275 true Chr05: 2243998-2250272 Glycine max
Glyma.05G025700 0.5kb upstream 0.5kb upstream 500 false Chr05: 2249773-2250272 Glycine max
Glyma.05G025700 0.5kb downstream 0.5kb downstream 6275 true Chr05: 2243498-2249772 Glycine max
Glyma.05G025700 0.5kb downstream 0.5kb downstream 500 false Chr05: 2243498-2243997 Glycine max
Glyma.05G025700 1.0kb upstream 1.0kb upstream 6775 true Chr05: 2243998-2250772 Glycine max
Glyma.05G025700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2249773-2250772 Glycine max
Glyma.05G025700 1.0kb downstream 1.0kb downstream 6775 true Chr05: 2242998-2249772 Glycine max
Glyma.05G025700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2242998-2243997 Glycine max
Glyma.05G025700 2.0kb upstream 2.0kb upstream 7775 true Chr05: 2243998-2251772 Glycine max
Glyma.05G025700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2249773-2251772 Glycine max
Glyma.05G025700 2.0kb downstream 2.0kb downstream 7775 true Chr05: 2241998-2249772 Glycine max
Glyma.05G025700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2241998-2243997 Glycine max
Glyma.05G025700 5.0kb upstream 5.0kb upstream 10775 true Chr05: 2243998-2254772 Glycine max
Glyma.05G025700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2249773-2254772 Glycine max
Glyma.05G025700 5.0kb downstream 5.0kb downstream 10775 true Chr05: 2238998-2249772 Glycine max
Glyma.05G025700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2238998-2243997 Glycine max
Glyma.05G025700 10.0kb upstream 10.0kb upstream 15775 true Chr05: 2243998-2259772 Glycine max
Glyma.05G025700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2249773-2259772 Glycine max
Glyma.05G025700 10.0kb downstream 10.0kb downstream 15775 true Chr05: 2233998-2249772 Glycine max
Glyma.05G025700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2233998-2243997 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239184 5265 Fabidae Singleton cluster - no MSA
123984464 5270 Rosid Singleton cluster - no MSA
123742642 5271 Pentapetalae View MSA
122791202 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0437249 0.0 0.18315 Low  
cufflinks 0.0962983 0.0 0.383734 Low  
cufflinks 0.682368 0.0 3.13301   High
cufflinks 0.0305671 0.0 0.13259 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0130133 0.0 0.061318 Low Low
cufflinks 0.0417062 0.0 0.175711 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.152       High
cufflinks 0.02     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain