Gene : Glyma.05G052800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR33593:SF2 - F5O11.5 Genomic Order:  528
Name:  ? Glyma.05G052800 Secondary Identifier:  ? PAC:30527067
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G052800 0.5kb upstream 0.5kb upstream 1688 true Chr05: 4734774-4736461 Glycine max
Glyma.05G052800 0.5kb upstream 0.5kb upstream 500 false Chr05: 4734774-4735273 Glycine max
Glyma.05G052800 0.5kb downstream 0.5kb downstream 1688 true Chr05: 4735274-4736961 Glycine max
Glyma.05G052800 0.5kb downstream 0.5kb downstream 500 false Chr05: 4736462-4736961 Glycine max
Glyma.05G052800 1.0kb upstream 1.0kb upstream 2188 true Chr05: 4734274-4736461 Glycine max
Glyma.05G052800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4734274-4735273 Glycine max
Glyma.05G052800 1.0kb downstream 1.0kb downstream 2188 true Chr05: 4735274-4737461 Glycine max
Glyma.05G052800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4736462-4737461 Glycine max
Glyma.05G052800 2.0kb upstream 2.0kb upstream 3188 true Chr05: 4733274-4736461 Glycine max
Glyma.05G052800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4733274-4735273 Glycine max
Glyma.05G052800 2.0kb downstream 2.0kb downstream 3188 true Chr05: 4735274-4738461 Glycine max
Glyma.05G052800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4736462-4738461 Glycine max
Glyma.05G052800 5.0kb upstream 5.0kb upstream 6188 true Chr05: 4730274-4736461 Glycine max
Glyma.05G052800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4730274-4735273 Glycine max
Glyma.05G052800 5.0kb downstream 5.0kb downstream 6188 true Chr05: 4735274-4741461 Glycine max
Glyma.05G052800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4736462-4741461 Glycine max
Glyma.05G052800 10.0kb upstream 10.0kb upstream 11188 true Chr05: 4725274-4736461 Glycine max
Glyma.05G052800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4725274-4735273 Glycine max
Glyma.05G052800 10.0kb downstream 10.0kb downstream 11188 true Chr05: 4735274-4746461 Glycine max
Glyma.05G052800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4736462-4746461 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041482 5273 Angiosperm View MSA
122310790 5265 Fabidae View MSA
124070642 5270 Rosid View MSA
123743657 5271 Pentapetalae View MSA
122790548 5272 Eudicot View MSA
121348528 5274 Embryophyte View MSA
123380900 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.452059 0.0 1.70663    
cufflinks 0.0722108 0.0 0.294604 Low Low
cufflinks 1.13915 0.0 4.11006    
cufflinks 0.598262 0.0 2.23342    
cufflinks 3.64893 0.0 11.5203    
cufflinks 7.35973 0.0 21.2511   High
cufflinks 0.0148705 0.0 0.0681098 Low Low
cufflinks 0.16519 0.0 0.651845 Low  
cufflinks 3.20787 0.0 10.4065    
cufflinks 0.172       Low
cufflinks 118.087     High High
cufflinks 0.696        
cufflinks 4.166        
cufflinks 5.389        
cufflinks 53.199     High High
cufflinks 3.8        
cufflinks 11.393     High  
cufflinks 0.194       Low
cufflinks 0.208       Low
cufflinks 3.915        
cufflinks 96.443     High High
cufflinks 1.308        
cufflinks 0.497        
cufflinks 89.572     High High
cufflinks 6.016        
cufflinks 110.42     High High

0 Strain