Gene : Glyma.05G053800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31500:SF7 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  538
Name:  ? Glyma.05G053800 Secondary Identifier:  ? PAC:30527115
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G053800 0.5kb upstream 0.5kb upstream 5869 true Chr05: 4865327-4871195 Glycine max
Glyma.05G053800 0.5kb upstream 0.5kb upstream 500 false Chr05: 4870696-4871195 Glycine max
Glyma.05G053800 0.5kb downstream 0.5kb downstream 5869 true Chr05: 4864827-4870695 Glycine max
Glyma.05G053800 0.5kb downstream 0.5kb downstream 500 false Chr05: 4864827-4865326 Glycine max
Glyma.05G053800 1.0kb upstream 1.0kb upstream 6369 true Chr05: 4865327-4871695 Glycine max
Glyma.05G053800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4870696-4871695 Glycine max
Glyma.05G053800 1.0kb downstream 1.0kb downstream 6369 true Chr05: 4864327-4870695 Glycine max
Glyma.05G053800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4864327-4865326 Glycine max
Glyma.05G053800 2.0kb upstream 2.0kb upstream 7369 true Chr05: 4865327-4872695 Glycine max
Glyma.05G053800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4870696-4872695 Glycine max
Glyma.05G053800 2.0kb downstream 2.0kb downstream 7369 true Chr05: 4863327-4870695 Glycine max
Glyma.05G053800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4863327-4865326 Glycine max
Glyma.05G053800 5.0kb upstream 5.0kb upstream 10369 true Chr05: 4865327-4875695 Glycine max
Glyma.05G053800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4870696-4875695 Glycine max
Glyma.05G053800 5.0kb downstream 5.0kb downstream 10369 true Chr05: 4860327-4870695 Glycine max
Glyma.05G053800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4860327-4865326 Glycine max
Glyma.05G053800 10.0kb upstream 10.0kb upstream 15369 true Chr05: 4865327-4880695 Glycine max
Glyma.05G053800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4870696-4880695 Glycine max
Glyma.05G053800 10.0kb downstream 10.0kb downstream 15369 true Chr05: 4855327-4870695 Glycine max
Glyma.05G053800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4855327-4865326 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302466 5265 Fabidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.50166 0.0 5.10721    
cufflinks 0.621593 0.0 2.27005   Low
cufflinks 1.83088 0.0 6.09712    
cufflinks 1.11963 0.0 3.92026    
cufflinks 21.9915 0.0 58.8351 High High
cufflinks 30.5444 0.0 82.8301 High High
cufflinks 3.07489 0.0 9.51172    
cufflinks 4.04779 0.0 12.0568    
cufflinks 26.8801 0.0 72.3722 High High
cufflinks 0.215        
cufflinks 2.404        
cufflinks 0.372        
cufflinks 7.566     High High
cufflinks 6.496       High
cufflinks 1.038        
cufflinks 0.114       Low
cufflinks 7.246     High High
cufflinks 0.732        
cufflinks 0.231        
cufflinks 0.177       Low
cufflinks 2.524        
cufflinks 0.236        
cufflinks 0.16       Low
cufflinks 4.039        
cufflinks 0.162       Low
cufflinks 5.851       High

0 Strain