Gene : Glyma.05G049800 G. max Wm82.a2.v1
Defline:  (1 of 354) PF00847 - AP2 domain (AP2) Genomic Order:  498
Name:  ? Glyma.05G049800 Secondary Identifier:  ? PAC:30527121
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G049800 0.5kb upstream 0.5kb upstream 1049 true Chr05: 4457504-4458552 Glycine max
Glyma.05G049800 0.5kb upstream 0.5kb upstream 500 false Chr05: 4457504-4458003 Glycine max
Glyma.05G049800 0.5kb downstream 0.5kb downstream 1049 true Chr05: 4458004-4459052 Glycine max
Glyma.05G049800 0.5kb downstream 0.5kb downstream 500 false Chr05: 4458553-4459052 Glycine max
Glyma.05G049800 1.0kb upstream 1.0kb upstream 1549 true Chr05: 4457004-4458552 Glycine max
Glyma.05G049800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4457004-4458003 Glycine max
Glyma.05G049800 1.0kb downstream 1.0kb downstream 1549 true Chr05: 4458004-4459552 Glycine max
Glyma.05G049800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4458553-4459552 Glycine max
Glyma.05G049800 2.0kb upstream 2.0kb upstream 2549 true Chr05: 4456004-4458552 Glycine max
Glyma.05G049800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4456004-4458003 Glycine max
Glyma.05G049800 2.0kb downstream 2.0kb downstream 2549 true Chr05: 4458004-4460552 Glycine max
Glyma.05G049800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4458553-4460552 Glycine max
Glyma.05G049800 5.0kb upstream 5.0kb upstream 5549 true Chr05: 4453004-4458552 Glycine max
Glyma.05G049800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4453004-4458003 Glycine max
Glyma.05G049800 5.0kb downstream 5.0kb downstream 5549 true Chr05: 4458004-4463552 Glycine max
Glyma.05G049800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4458553-4463552 Glycine max
Glyma.05G049800 10.0kb upstream 10.0kb upstream 10549 true Chr05: 4448004-4458552 Glycine max
Glyma.05G049800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4448004-4458003 Glycine max
Glyma.05G049800 10.0kb downstream 10.0kb downstream 10549 true Chr05: 4458004-4468552 Glycine max
Glyma.05G049800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4458553-4468552 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303157 5265 Fabidae View MSA
124070637 5270 Rosid View MSA
123747343 5271 Pentapetalae View MSA
122787056 5272 Eudicot View MSA
122049572 5273 Angiosperm View MSA
121351578 5274 Embryophyte View MSA
123382234 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.274019 0.0 1.09699   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0940083 0.0 0.402228 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0363419 0.0 0.166961 Low Low
cufflinks 0.0849294 0.0 0.363967 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0918008 0.0 0.391242 Low  
cufflinks 20.173     High High
cufflinks 3.771        
cufflinks 1.188        
cufflinks 0.652        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.364        
cufflinks 0.939        
cufflinks 99.72     High High
cufflinks 0.573        
cufflinks 0.027     Low Low
cufflinks 0.445        
cufflinks 5.38        
cufflinks 0.353        
cufflinks 0.524        
cufflinks 2.812        
cufflinks 0.568        
cufflinks 2.663        

0 Strain