Gene : Glyma.05G042200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34806:SF1 - HIGH-AFFINITY NITRATE TRANSPORTER 3.1-RELATED Genomic Order:  422
Name:  ? Glyma.05G042200 Secondary Identifier:  ? PAC:30526619
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G042200 0.5kb upstream 0.5kb upstream 1931 true Chr05: 3775386-3777316 Glycine max
Glyma.05G042200 0.5kb upstream 0.5kb upstream 500 false Chr05: 3775386-3775885 Glycine max
Glyma.05G042200 0.5kb downstream 0.5kb downstream 1931 true Chr05: 3775886-3777816 Glycine max
Glyma.05G042200 0.5kb downstream 0.5kb downstream 500 false Chr05: 3777317-3777816 Glycine max
Glyma.05G042200 1.0kb upstream 1.0kb upstream 2431 true Chr05: 3774886-3777316 Glycine max
Glyma.05G042200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3774886-3775885 Glycine max
Glyma.05G042200 1.0kb downstream 1.0kb downstream 2431 true Chr05: 3775886-3778316 Glycine max
Glyma.05G042200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3777317-3778316 Glycine max
Glyma.05G042200 2.0kb upstream 2.0kb upstream 3431 true Chr05: 3773886-3777316 Glycine max
Glyma.05G042200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3773886-3775885 Glycine max
Glyma.05G042200 2.0kb downstream 2.0kb downstream 3431 true Chr05: 3775886-3779316 Glycine max
Glyma.05G042200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3777317-3779316 Glycine max
Glyma.05G042200 5.0kb upstream 5.0kb upstream 6431 true Chr05: 3770886-3777316 Glycine max
Glyma.05G042200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3770886-3775885 Glycine max
Glyma.05G042200 5.0kb downstream 5.0kb downstream 6431 true Chr05: 3775886-3782316 Glycine max
Glyma.05G042200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3777317-3782316 Glycine max
Glyma.05G042200 10.0kb upstream 10.0kb upstream 11431 true Chr05: 3765886-3777316 Glycine max
Glyma.05G042200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3765886-3775885 Glycine max
Glyma.05G042200 10.0kb downstream 10.0kb downstream 11431 true Chr05: 3775886-3787316 Glycine max
Glyma.05G042200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3777317-3787316 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300620 5265 Fabidae View MSA
124066061 5270 Rosid View MSA
123741749 5271 Pentapetalae View MSA
122789119 5272 Eudicot View MSA
122047039 5273 Angiosperm View MSA
121346614 5274 Embryophyte View MSA
123428367 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.01845 0.0 7.01004    
cufflinks 1.44343 0.0 5.15724    
cufflinks 1.99999 0.0 6.9673    
cufflinks 2.8349 0.0 9.48732    
cufflinks 51.8234 0.0 140.937 High High
cufflinks 45.8003 0.0 123.437 High High
cufflinks 0.980233 0.0 3.5819   Low
cufflinks 4.28588 0.0 13.5468    
cufflinks 34.7027 0.0 92.7288 High High
cufflinks 2.496        
cufflinks 1.194        
cufflinks 1.667        
cufflinks 2.755        
cufflinks 1.036        
cufflinks 5.123        
cufflinks 0.65        
cufflinks 13.624     High High
cufflinks 2.116        
cufflinks 1.101        
cufflinks 0.512       Low
cufflinks 4.098        
cufflinks 0.45       Low
cufflinks 1.27        
cufflinks 3.567        
cufflinks 0.277       Low
cufflinks 12.104     High High

0 Strain