Gene : Glyma.05G044400 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  444
Name:  ? Glyma.05G044400 Secondary Identifier:  ? PAC:30525405
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G044400 0.5kb upstream 0.5kb upstream 2244 true Chr05: 3971241-3973484 Glycine max
Glyma.05G044400 0.5kb upstream 0.5kb upstream 500 false Chr05: 3972985-3973484 Glycine max
Glyma.05G044400 0.5kb downstream 0.5kb downstream 2244 true Chr05: 3970741-3972984 Glycine max
Glyma.05G044400 0.5kb downstream 0.5kb downstream 500 false Chr05: 3970741-3971240 Glycine max
Glyma.05G044400 1.0kb upstream 1.0kb upstream 2744 true Chr05: 3971241-3973984 Glycine max
Glyma.05G044400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3972985-3973984 Glycine max
Glyma.05G044400 1.0kb downstream 1.0kb downstream 2744 true Chr05: 3970241-3972984 Glycine max
Glyma.05G044400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3970241-3971240 Glycine max
Glyma.05G044400 2.0kb upstream 2.0kb upstream 3744 true Chr05: 3971241-3974984 Glycine max
Glyma.05G044400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3972985-3974984 Glycine max
Glyma.05G044400 2.0kb downstream 2.0kb downstream 3744 true Chr05: 3969241-3972984 Glycine max
Glyma.05G044400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3969241-3971240 Glycine max
Glyma.05G044400 5.0kb upstream 5.0kb upstream 6744 true Chr05: 3971241-3977984 Glycine max
Glyma.05G044400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3972985-3977984 Glycine max
Glyma.05G044400 5.0kb downstream 5.0kb downstream 6744 true Chr05: 3966241-3972984 Glycine max
Glyma.05G044400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3966241-3971240 Glycine max
Glyma.05G044400 10.0kb upstream 10.0kb upstream 11744 true Chr05: 3971241-3982984 Glycine max
Glyma.05G044400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3972985-3982984 Glycine max
Glyma.05G044400 10.0kb downstream 10.0kb downstream 11744 true Chr05: 3961241-3972984 Glycine max
Glyma.05G044400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3961241-3971240 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310699 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.458573 0.0 1.78996   Low
cufflinks 0.578546 0.0 2.23419    
cufflinks 12.6385 0.0 37.4992   High
cufflinks 0.906504 0.0 3.43136    
cufflinks 1.30555 0.0 4.86295    
cufflinks 10.8661 0.0 32.9866   High
cufflinks 0.796569 0.0 3.0355    
cufflinks 1.37891 0.0 5.11583    
cufflinks 1.21383 0.0 4.53294    
cufflinks 1.185        
cufflinks 4.451       High
cufflinks 2.129        
cufflinks 1.239        
cufflinks 0.257       Low
cufflinks 3.238       High
cufflinks 0.389        
cufflinks 3.802       High
cufflinks 1.902        
cufflinks 0.242       Low
cufflinks 0.274       Low
cufflinks 1.974        
cufflinks 0.213       Low
cufflinks 0.233       Low
cufflinks 3.943       High
cufflinks 0.254       Low
cufflinks 1.868        

0 Strain