Gene : Glyma.05G040000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR14281:SF0 - KINETOCHORE PROTEIN SPC25 Genomic Order:  400
Name:  ? Glyma.05G040000 Secondary Identifier:  ? PAC:30526628
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G040000 0.5kb upstream 0.5kb upstream 4783 true Chr05: 3560588-3565370 Glycine max
Glyma.05G040000 0.5kb upstream 0.5kb upstream 500 false Chr05: 3560588-3561087 Glycine max
Glyma.05G040000 0.5kb downstream 0.5kb downstream 4783 true Chr05: 3561088-3565870 Glycine max
Glyma.05G040000 0.5kb downstream 0.5kb downstream 500 false Chr05: 3565371-3565870 Glycine max
Glyma.05G040000 1.0kb upstream 1.0kb upstream 5283 true Chr05: 3560088-3565370 Glycine max
Glyma.05G040000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3560088-3561087 Glycine max
Glyma.05G040000 1.0kb downstream 1.0kb downstream 5283 true Chr05: 3561088-3566370 Glycine max
Glyma.05G040000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3565371-3566370 Glycine max
Glyma.05G040000 2.0kb upstream 2.0kb upstream 6283 true Chr05: 3559088-3565370 Glycine max
Glyma.05G040000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3559088-3561087 Glycine max
Glyma.05G040000 2.0kb downstream 2.0kb downstream 6283 true Chr05: 3561088-3567370 Glycine max
Glyma.05G040000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3565371-3567370 Glycine max
Glyma.05G040000 5.0kb upstream 5.0kb upstream 9283 true Chr05: 3556088-3565370 Glycine max
Glyma.05G040000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3556088-3561087 Glycine max
Glyma.05G040000 5.0kb downstream 5.0kb downstream 9283 true Chr05: 3561088-3570370 Glycine max
Glyma.05G040000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3565371-3570370 Glycine max
Glyma.05G040000 10.0kb upstream 10.0kb upstream 14283 true Chr05: 3551088-3565370 Glycine max
Glyma.05G040000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3551088-3561087 Glycine max
Glyma.05G040000 10.0kb downstream 10.0kb downstream 14283 true Chr05: 3561088-3575370 Glycine max
Glyma.05G040000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3565371-3575370 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304747 5265 Fabidae View MSA
124060731 5270 Rosid View MSA
123740734 5271 Pentapetalae View MSA
122790500 5272 Eudicot View MSA
122047601 5273 Angiosperm View MSA
121348266 5274 Embryophyte View MSA
123424992 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.750081 0.0 2.73456   Low
cufflinks 5.30825 0.0 15.5368   High
cufflinks 2.16055 0.0 7.14526    
cufflinks 1.80366 0.0 6.11282    
cufflinks 4.02471 0.0 12.2814    
cufflinks 3.01527 0.0 9.57979    
cufflinks 1.79708 0.0 6.12506    
cufflinks 1.4037 0.0 4.88288    
cufflinks 3.37924 0.0 10.5434    
cufflinks 0.813       Low
cufflinks 1.128        
cufflinks 0.959        
cufflinks 2.459       High
cufflinks 2.985       High
cufflinks 1.22        
cufflinks 1.985        
cufflinks 0.521       Low
cufflinks 0.83       Low
cufflinks 2.598       High
cufflinks 1.398        
cufflinks 1.313        
cufflinks 1.693        
cufflinks 2.692       High
cufflinks 1.2        
cufflinks 1.346        
cufflinks 0.93        

0 Strain