Gene : Glyma.05G040900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11721 - 60S RIBOSOMAL PROTEIN L27A Genomic Order:  409
Name:  ? Glyma.05G040900 Secondary Identifier:  ? PAC:30527119
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G040900 0.5kb upstream 0.5kb upstream 2661 true Chr05: 3685657-3688317 Glycine max
Glyma.05G040900 0.5kb upstream 0.5kb upstream 500 false Chr05: 3687818-3688317 Glycine max
Glyma.05G040900 0.5kb downstream 0.5kb downstream 2661 true Chr05: 3685157-3687817 Glycine max
Glyma.05G040900 0.5kb downstream 0.5kb downstream 500 false Chr05: 3685157-3685656 Glycine max
Glyma.05G040900 1.0kb upstream 1.0kb upstream 3161 true Chr05: 3685657-3688817 Glycine max
Glyma.05G040900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3687818-3688817 Glycine max
Glyma.05G040900 1.0kb downstream 1.0kb downstream 3161 true Chr05: 3684657-3687817 Glycine max
Glyma.05G040900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3684657-3685656 Glycine max
Glyma.05G040900 2.0kb upstream 2.0kb upstream 4161 true Chr05: 3685657-3689817 Glycine max
Glyma.05G040900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3687818-3689817 Glycine max
Glyma.05G040900 2.0kb downstream 2.0kb downstream 4161 true Chr05: 3683657-3687817 Glycine max
Glyma.05G040900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3683657-3685656 Glycine max
Glyma.05G040900 5.0kb upstream 5.0kb upstream 7161 true Chr05: 3685657-3692817 Glycine max
Glyma.05G040900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3687818-3692817 Glycine max
Glyma.05G040900 5.0kb downstream 5.0kb downstream 7161 true Chr05: 3680657-3687817 Glycine max
Glyma.05G040900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3680657-3685656 Glycine max
Glyma.05G040900 10.0kb upstream 10.0kb upstream 12161 true Chr05: 3685657-3697817 Glycine max
Glyma.05G040900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3687818-3697817 Glycine max
Glyma.05G040900 10.0kb downstream 10.0kb downstream 12161 true Chr05: 3675657-3687817 Glycine max
Glyma.05G040900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3675657-3685656 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313836 5265 Fabidae View MSA
124061356 5270 Rosid View MSA
123746209 5271 Pentapetalae View MSA
122794134 5272 Eudicot View MSA
122049114 5273 Angiosperm View MSA
121346652 5274 Embryophyte View MSA
123426087 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.1276 0.0 148.764 High  
cufflinks 72.5078 0.0 237.725 High  
cufflinks 22.4086 0.0 77.7718 High Low
cufflinks 40.1957 0.0 130.29 High  
cufflinks 130.364 0.0 483.412 High High
cufflinks 102.728 0.0 355.001 High  
cufflinks 80.2581 0.0 267.4 High  
cufflinks 73.9931 0.0 242.676 High  
cufflinks 68.4334 0.0 224.604 High  
cufflinks 17.926     High  
cufflinks 1.465       Low
cufflinks 10.103     High  
cufflinks 44.041     High High
cufflinks 69.427     High High
cufflinks 0.977       Low
cufflinks 9.008     High  
cufflinks 8.455     High  
cufflinks 10.033     High  
cufflinks 19.552     High  
cufflinks 5.06        
cufflinks 3.204        
cufflinks 6.533        
cufflinks 16.075     High  
cufflinks 1.969       Low
cufflinks 6.328        
cufflinks 5.759        

0 Strain