Gene : Glyma.05G060900 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  609
Name:  ? Glyma.05G060900 Secondary Identifier:  ? PAC:30524091
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G060900 0.5kb upstream 0.5kb upstream 3665 true Chr05: 5694122-5697786 Glycine max
Glyma.05G060900 0.5kb upstream 0.5kb upstream 500 false Chr05: 5694122-5694621 Glycine max
Glyma.05G060900 0.5kb downstream 0.5kb downstream 3665 true Chr05: 5694622-5698286 Glycine max
Glyma.05G060900 0.5kb downstream 0.5kb downstream 500 false Chr05: 5697787-5698286 Glycine max
Glyma.05G060900 1.0kb upstream 1.0kb upstream 4165 true Chr05: 5693622-5697786 Glycine max
Glyma.05G060900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5693622-5694621 Glycine max
Glyma.05G060900 1.0kb downstream 1.0kb downstream 4165 true Chr05: 5694622-5698786 Glycine max
Glyma.05G060900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5697787-5698786 Glycine max
Glyma.05G060900 2.0kb upstream 2.0kb upstream 5165 true Chr05: 5692622-5697786 Glycine max
Glyma.05G060900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5692622-5694621 Glycine max
Glyma.05G060900 2.0kb downstream 2.0kb downstream 5165 true Chr05: 5694622-5699786 Glycine max
Glyma.05G060900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5697787-5699786 Glycine max
Glyma.05G060900 5.0kb upstream 5.0kb upstream 8165 true Chr05: 5689622-5697786 Glycine max
Glyma.05G060900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5689622-5694621 Glycine max
Glyma.05G060900 5.0kb downstream 5.0kb downstream 8165 true Chr05: 5694622-5702786 Glycine max
Glyma.05G060900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5697787-5702786 Glycine max
Glyma.05G060900 10.0kb upstream 10.0kb upstream 13165 true Chr05: 5684622-5697786 Glycine max
Glyma.05G060900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5684622-5694621 Glycine max
Glyma.05G060900 10.0kb downstream 10.0kb downstream 13165 true Chr05: 5694622-5707786 Glycine max
Glyma.05G060900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5697787-5707786 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308376 5265 Fabidae View MSA
124065007 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.55499 0.0 17.7358   High
cufflinks 3.12168 0.0 13.5899    
cufflinks 3.93629 0.0 15.7564    
cufflinks 2.71693 0.0 10.7128    
cufflinks 2.2787 0.0 7.05353    
cufflinks 1.02793 0.0 4.01216   Low
cufflinks 2.86299 0.0 11.0226    
cufflinks 2.5761 0.0 10.3101    
cufflinks 2.32125 0.0 9.60235    
cufflinks 0.887       Low
cufflinks 1.082        
cufflinks 2.118        
cufflinks 0.785       Low
cufflinks 1.293        
cufflinks 1.048        
cufflinks 1.92        
cufflinks 1.205        
cufflinks 2.016        
cufflinks 1.799        
cufflinks 2.429       High
cufflinks 0.829       Low
cufflinks 2.448       High
cufflinks 1.928        
cufflinks 1.292        
cufflinks 2.157       High
cufflinks 1.02        

0 Strain