Gene : Glyma.05G058200 G. max Wm82.a2.v1
Defline:  (1 of 4) PF04073 - Aminoacyl-tRNA editing domain (tRNA_edit) Genomic Order:  582
Name:  ? Glyma.05G058200 Secondary Identifier:  ? PAC:30525699
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G058200 0.5kb upstream 0.5kb upstream 4758 true Chr05: 5390104-5394861 Glycine max
Glyma.05G058200 0.5kb upstream 0.5kb upstream 500 false Chr05: 5390104-5390603 Glycine max
Glyma.05G058200 0.5kb downstream 0.5kb downstream 4758 true Chr05: 5390604-5395361 Glycine max
Glyma.05G058200 0.5kb downstream 0.5kb downstream 500 false Chr05: 5394862-5395361 Glycine max
Glyma.05G058200 1.0kb upstream 1.0kb upstream 5258 true Chr05: 5389604-5394861 Glycine max
Glyma.05G058200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5389604-5390603 Glycine max
Glyma.05G058200 1.0kb downstream 1.0kb downstream 5258 true Chr05: 5390604-5395861 Glycine max
Glyma.05G058200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5394862-5395861 Glycine max
Glyma.05G058200 2.0kb upstream 2.0kb upstream 6258 true Chr05: 5388604-5394861 Glycine max
Glyma.05G058200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5388604-5390603 Glycine max
Glyma.05G058200 2.0kb downstream 2.0kb downstream 6258 true Chr05: 5390604-5396861 Glycine max
Glyma.05G058200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5394862-5396861 Glycine max
Glyma.05G058200 5.0kb upstream 5.0kb upstream 9258 true Chr05: 5385604-5394861 Glycine max
Glyma.05G058200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5385604-5390603 Glycine max
Glyma.05G058200 5.0kb downstream 5.0kb downstream 9258 true Chr05: 5390604-5399861 Glycine max
Glyma.05G058200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5394862-5399861 Glycine max
Glyma.05G058200 10.0kb upstream 10.0kb upstream 14258 true Chr05: 5380604-5394861 Glycine max
Glyma.05G058200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5380604-5390603 Glycine max
Glyma.05G058200 10.0kb downstream 10.0kb downstream 14258 true Chr05: 5390604-5404861 Glycine max
Glyma.05G058200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5394862-5404861 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300572 5265 Fabidae View MSA
124069035 5270 Rosid View MSA
123740763 5271 Pentapetalae View MSA
122788934 5272 Eudicot View MSA
122045827 5273 Angiosperm View MSA
121345961 5274 Embryophyte View MSA
123425466 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.81608 0.0 15.276    
cufflinks 5.1183 0.0 16.1235    
cufflinks 3.06638 0.0 10.3975   Low
cufflinks 3.45041 0.0 11.4819   Low
cufflinks 6.35153 0.0 19.2586   High
cufflinks 4.2708 0.0 13.7492    
cufflinks 4.00412 0.0 13.0198    
cufflinks 4.29932 0.0 13.8563    
cufflinks 5.08004 0.0 15.9787    
cufflinks 0.798        
cufflinks 0.72        
cufflinks 0.649        
cufflinks 1.35       High
cufflinks 2.014       High
cufflinks 0.64        
cufflinks 0.574       Low
cufflinks 1.395       High
cufflinks 0.605        
cufflinks 1.208        
cufflinks 0.807        
cufflinks 1.29       High
cufflinks 0.608        
cufflinks 0.681        
cufflinks 0.852        
cufflinks 0.608        
cufflinks 1.116        

0 Strain