Gene : Glyma.05G055000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10003:SF27 - COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE Genomic Order:  550
Name:  ? Glyma.05G055000 Secondary Identifier:  ? PAC:30523781
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G055000 0.5kb upstream 0.5kb upstream 4982 true Chr05: 4996520-5001501 Glycine max
Glyma.05G055000 0.5kb upstream 0.5kb upstream 500 false Chr05: 5001002-5001501 Glycine max
Glyma.05G055000 0.5kb downstream 0.5kb downstream 4982 true Chr05: 4996020-5001001 Glycine max
Glyma.05G055000 0.5kb downstream 0.5kb downstream 500 false Chr05: 4996020-4996519 Glycine max
Glyma.05G055000 1.0kb upstream 1.0kb upstream 5482 true Chr05: 4996520-5002001 Glycine max
Glyma.05G055000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5001002-5002001 Glycine max
Glyma.05G055000 1.0kb downstream 1.0kb downstream 5482 true Chr05: 4995520-5001001 Glycine max
Glyma.05G055000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4995520-4996519 Glycine max
Glyma.05G055000 2.0kb upstream 2.0kb upstream 6482 true Chr05: 4996520-5003001 Glycine max
Glyma.05G055000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5001002-5003001 Glycine max
Glyma.05G055000 2.0kb downstream 2.0kb downstream 6482 true Chr05: 4994520-5001001 Glycine max
Glyma.05G055000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4994520-4996519 Glycine max
Glyma.05G055000 5.0kb upstream 5.0kb upstream 9482 true Chr05: 4996520-5006001 Glycine max
Glyma.05G055000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5001002-5006001 Glycine max
Glyma.05G055000 5.0kb downstream 5.0kb downstream 9482 true Chr05: 4991520-5001001 Glycine max
Glyma.05G055000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4991520-4996519 Glycine max
Glyma.05G055000 10.0kb upstream 10.0kb upstream 14482 true Chr05: 4996520-5011001 Glycine max
Glyma.05G055000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5001002-5011001 Glycine max
Glyma.05G055000 10.0kb downstream 10.0kb downstream 14482 true Chr05: 4986520-5001001 Glycine max
Glyma.05G055000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4986520-4996519 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302765 5265 Fabidae View MSA
124062271 5270 Rosid View MSA
123739046 5271 Pentapetalae View MSA
122793199 5272 Eudicot View MSA
122046170 5273 Angiosperm View MSA
121346754 5274 Embryophyte View MSA
123425336 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.4124 0.0 80.1159 High  
cufflinks 21.2731 0.0 73.0956 High  
cufflinks 7.39571 0.0 29.7384   Low
cufflinks 16.6368 0.0 57.9335    
cufflinks 24.028 0.0 82.2657 High  
cufflinks 23.4842 0.0 80.4833 High  
cufflinks 22.6119 0.0 77.5715 High  
cufflinks 8.76367 0.0 33.8707   Low
cufflinks 34.6613 0.0 120.331 High High
cufflinks 0.861       Low
cufflinks 9.309     High High
cufflinks 3.334        
cufflinks 4.058        
cufflinks 4.18        
cufflinks 10.727     High High
cufflinks 1.636        
cufflinks 1.496        
cufflinks 3.258        
cufflinks 1.082       Low
cufflinks 1.714        
cufflinks 11.268     High High
cufflinks 2.674        
cufflinks 2.0        
cufflinks 6.691     High  
cufflinks 2.882        
cufflinks 4.735        

0 Strain