Gene : Glyma.05G080800 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00160//PF00515//PF13414 - Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase) // Tetratricopeptide repeat (TPR_1) // TPR repeat (TPR_11) Genomic Order:  808
Name:  ? Glyma.05G080800 Secondary Identifier:  ? PAC:30525613
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G080800 0.5kb upstream 0.5kb upstream 4152 true Chr05: 11891126-11895277 Glycine max
Glyma.05G080800 0.5kb upstream 0.5kb upstream 500 false Chr05: 11894778-11895277 Glycine max
Glyma.05G080800 0.5kb downstream 0.5kb downstream 4152 true Chr05: 11890626-11894777 Glycine max
Glyma.05G080800 0.5kb downstream 0.5kb downstream 500 false Chr05: 11890626-11891125 Glycine max
Glyma.05G080800 1.0kb upstream 1.0kb upstream 4652 true Chr05: 11891126-11895777 Glycine max
Glyma.05G080800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 11894778-11895777 Glycine max
Glyma.05G080800 1.0kb downstream 1.0kb downstream 4652 true Chr05: 11890126-11894777 Glycine max
Glyma.05G080800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 11890126-11891125 Glycine max
Glyma.05G080800 2.0kb upstream 2.0kb upstream 5652 true Chr05: 11891126-11896777 Glycine max
Glyma.05G080800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 11894778-11896777 Glycine max
Glyma.05G080800 2.0kb downstream 2.0kb downstream 5652 true Chr05: 11889126-11894777 Glycine max
Glyma.05G080800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 11889126-11891125 Glycine max
Glyma.05G080800 5.0kb upstream 5.0kb upstream 8652 true Chr05: 11891126-11899777 Glycine max
Glyma.05G080800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 11894778-11899777 Glycine max
Glyma.05G080800 5.0kb downstream 5.0kb downstream 8652 true Chr05: 11886126-11894777 Glycine max
Glyma.05G080800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 11886126-11891125 Glycine max
Glyma.05G080800 10.0kb upstream 10.0kb upstream 13652 true Chr05: 11891126-11904777 Glycine max
Glyma.05G080800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 11894778-11904777 Glycine max
Glyma.05G080800 10.0kb downstream 10.0kb downstream 13652 true Chr05: 11881126-11894777 Glycine max
Glyma.05G080800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 11881126-11891125 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305528 5265 Fabidae View MSA
124069399 5270 Rosid View MSA
123742275 5271 Pentapetalae View MSA
122795031 5272 Eudicot View MSA
122048372 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121348447 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.69778 0.0 11.2809   Low
cufflinks 9.13495 0.0 25.1038    
cufflinks 3.75961 0.0 11.478   Low
cufflinks 6.55853 0.0 18.5723    
cufflinks 14.1513 0.0 37.9209   High
cufflinks 7.36585 0.0 20.603    
cufflinks 10.8494 0.0 29.4466    
cufflinks 9.07255 0.0 24.9247    
cufflinks 8.6988 0.0 23.968    
cufflinks 2.511        
cufflinks 1.236       Low
cufflinks 3.131        
cufflinks 6.735       High
cufflinks 11.905     High High
cufflinks 1.546        
cufflinks 1.806        
cufflinks 2.378        
cufflinks 2.478        
cufflinks 5.264       High
cufflinks 0.99       Low
cufflinks 2.289        
cufflinks 1.433        
cufflinks 2.689        
cufflinks 1.977        
cufflinks 1.253       Low
cufflinks 2.742        

0 Strain