Gene : Glyma.05G078400 G. max Wm82.a2.v1
Defline:  (1 of 136) PF05970//PF14214 - PIF1-like helicase (PIF1) // Helitron helicase-like domain at N-terminus (Helitron_like_N) Genomic Order:  784
Name:  ? Glyma.05G078400 Secondary Identifier:  ? PAC:30526634
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G078400 0.5kb upstream 0.5kb upstream 5111 true Chr05: 10467550-10472660 Glycine max
Glyma.05G078400 0.5kb upstream 0.5kb upstream 500 false Chr05: 10472161-10472660 Glycine max
Glyma.05G078400 0.5kb downstream 0.5kb downstream 5111 true Chr05: 10467050-10472160 Glycine max
Glyma.05G078400 0.5kb downstream 0.5kb downstream 500 false Chr05: 10467050-10467549 Glycine max
Glyma.05G078400 1.0kb upstream 1.0kb upstream 5611 true Chr05: 10467550-10473160 Glycine max
Glyma.05G078400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 10472161-10473160 Glycine max
Glyma.05G078400 1.0kb downstream 1.0kb downstream 5611 true Chr05: 10466550-10472160 Glycine max
Glyma.05G078400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 10466550-10467549 Glycine max
Glyma.05G078400 2.0kb upstream 2.0kb upstream 6611 true Chr05: 10467550-10474160 Glycine max
Glyma.05G078400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 10472161-10474160 Glycine max
Glyma.05G078400 2.0kb downstream 2.0kb downstream 6611 true Chr05: 10465550-10472160 Glycine max
Glyma.05G078400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 10465550-10467549 Glycine max
Glyma.05G078400 5.0kb upstream 5.0kb upstream 9611 true Chr05: 10467550-10477160 Glycine max
Glyma.05G078400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 10472161-10477160 Glycine max
Glyma.05G078400 5.0kb downstream 5.0kb downstream 9611 true Chr05: 10462550-10472160 Glycine max
Glyma.05G078400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 10462550-10467549 Glycine max
Glyma.05G078400 10.0kb upstream 10.0kb upstream 14611 true Chr05: 10467550-10482160 Glycine max
Glyma.05G078400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 10472161-10482160 Glycine max
Glyma.05G078400 10.0kb downstream 10.0kb downstream 14611 true Chr05: 10457550-10472160 Glycine max
Glyma.05G078400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 10457550-10467549 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
122315190 5265 Fabidae View MSA
124051325 5270 Rosid View MSA
123752824 5271 Pentapetalae View MSA
122797633 5272 Eudicot View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0033799 0.0 0.0162507 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0063637 0.0 0.028783 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain