Gene : Glyma.05G088300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31662:SF1 - A_IG002N01.32 PROTEIN-RELATED Genomic Order:  883
Name:  ? Glyma.05G088300 Secondary Identifier:  ? PAC:30526575
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G088300 0.5kb upstream 0.5kb upstream 4145 true Chr05: 18608993-18613137 Glycine max
Glyma.05G088300 0.5kb upstream 0.5kb upstream 500 false Chr05: 18608993-18609492 Glycine max
Glyma.05G088300 0.5kb downstream 0.5kb downstream 4145 true Chr05: 18609493-18613637 Glycine max
Glyma.05G088300 0.5kb downstream 0.5kb downstream 500 false Chr05: 18613138-18613637 Glycine max
Glyma.05G088300 1.0kb upstream 1.0kb upstream 4645 true Chr05: 18608493-18613137 Glycine max
Glyma.05G088300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 18608493-18609492 Glycine max
Glyma.05G088300 1.0kb downstream 1.0kb downstream 4645 true Chr05: 18609493-18614137 Glycine max
Glyma.05G088300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 18613138-18614137 Glycine max
Glyma.05G088300 2.0kb upstream 2.0kb upstream 5645 true Chr05: 18607493-18613137 Glycine max
Glyma.05G088300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 18607493-18609492 Glycine max
Glyma.05G088300 2.0kb downstream 2.0kb downstream 5645 true Chr05: 18609493-18615137 Glycine max
Glyma.05G088300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 18613138-18615137 Glycine max
Glyma.05G088300 5.0kb upstream 5.0kb upstream 8645 true Chr05: 18604493-18613137 Glycine max
Glyma.05G088300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 18604493-18609492 Glycine max
Glyma.05G088300 5.0kb downstream 5.0kb downstream 8645 true Chr05: 18609493-18618137 Glycine max
Glyma.05G088300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 18613138-18618137 Glycine max
Glyma.05G088300 10.0kb upstream 10.0kb upstream 13645 true Chr05: 18599493-18613137 Glycine max
Glyma.05G088300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 18599493-18609492 Glycine max
Glyma.05G088300 10.0kb downstream 10.0kb downstream 13645 true Chr05: 18609493-18623137 Glycine max
Glyma.05G088300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 18613138-18623137 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254815 5265 Fabidae View MSA
124072235 5270 Rosid View MSA
123751469 5271 Pentapetalae View MSA
122797914 5272 Eudicot View MSA
122051487 5273 Angiosperm View MSA
121348911 5274 Embryophyte View MSA
123381074 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.57194 0.0 10.7404    
cufflinks 4.74076 0.0 16.9705   High
cufflinks 2.75912 0.0 9.01058   Low
cufflinks 3.88917 0.0 14.7647    
cufflinks 3.72171 0.0 14.5564    
cufflinks 2.53879 0.0 8.47347   Low
cufflinks 4.74369 0.0 16.8581   High
cufflinks 4.58885 0.0 19.9761    
cufflinks 3.53363 0.0 10.6463    
cufflinks 0.81        
cufflinks 0.197       Low
cufflinks 1.051        
cufflinks 0.798        
cufflinks 0.904        
cufflinks 0.546        
cufflinks 1.219        
cufflinks 0.33       Low
cufflinks 1.137        
cufflinks 2.1       High
cufflinks 1.266        
cufflinks 0.298       Low
cufflinks 1.274        
cufflinks 1.576       High
cufflinks 0.266       Low
cufflinks 1.141        
cufflinks 0.289       Low

0 Strain