Gene : Glyma.05G089200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11785:SF411 - CATIONIC AMINO ACID TRANSPORTER 2, VACUOLAR-RELATED Genomic Order:  892
Name:  ? Glyma.05G089200 Secondary Identifier:  ? PAC:30524981
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G089200 0.5kb upstream 0.5kb upstream 18405 true Chr05: 19482342-19500746 Glycine max
Glyma.05G089200 0.5kb upstream 0.5kb upstream 500 false Chr05: 19482342-19482841 Glycine max
Glyma.05G089200 0.5kb downstream 0.5kb downstream 18405 true Chr05: 19482842-19501246 Glycine max
Glyma.05G089200 0.5kb downstream 0.5kb downstream 500 false Chr05: 19500747-19501246 Glycine max
Glyma.05G089200 1.0kb upstream 1.0kb upstream 18905 true Chr05: 19481842-19500746 Glycine max
Glyma.05G089200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 19481842-19482841 Glycine max
Glyma.05G089200 1.0kb downstream 1.0kb downstream 18905 true Chr05: 19482842-19501746 Glycine max
Glyma.05G089200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 19500747-19501746 Glycine max
Glyma.05G089200 2.0kb upstream 2.0kb upstream 19905 true Chr05: 19480842-19500746 Glycine max
Glyma.05G089200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 19480842-19482841 Glycine max
Glyma.05G089200 2.0kb downstream 2.0kb downstream 19905 true Chr05: 19482842-19502746 Glycine max
Glyma.05G089200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 19500747-19502746 Glycine max
Glyma.05G089200 5.0kb upstream 5.0kb upstream 22905 true Chr05: 19477842-19500746 Glycine max
Glyma.05G089200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 19477842-19482841 Glycine max
Glyma.05G089200 5.0kb downstream 5.0kb downstream 22905 true Chr05: 19482842-19505746 Glycine max
Glyma.05G089200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 19500747-19505746 Glycine max
Glyma.05G089200 10.0kb upstream 10.0kb upstream 27905 true Chr05: 19472842-19500746 Glycine max
Glyma.05G089200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 19472842-19482841 Glycine max
Glyma.05G089200 10.0kb downstream 10.0kb downstream 27905 true Chr05: 19482842-19510746 Glycine max
Glyma.05G089200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 19500747-19510746 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311170 5265 Fabidae View MSA
124069554 5270 Rosid View MSA
123740707 5271 Pentapetalae View MSA
122796807 5272 Eudicot View MSA
122048985 5273 Angiosperm View MSA
121349992 5274 Embryophyte View MSA
123428616 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.403 0.0 27.8348    
cufflinks 5.55245 0.0 15.3886   Low
cufflinks 8.95091 0.0 24.0398    
cufflinks 14.8445 0.0 39.6319   High
cufflinks 7.95029 0.0 21.498    
cufflinks 6.77253 0.0 18.462    
cufflinks 5.37677 0.0 14.9208   Low
cufflinks 22.635 0.0 61.3248 High High
cufflinks 8.0169 0.0 21.6527    
cufflinks 2.828       High
cufflinks 0.813       Low
cufflinks 0.926        
cufflinks 1.143        
cufflinks 0.701       Low
cufflinks 0.883        
cufflinks 1.678        
cufflinks 1.296        
cufflinks 0.831        
cufflinks 1.008        
cufflinks 2.084       High
cufflinks 1.105        
cufflinks 2.387       High
cufflinks 1.324        
cufflinks 0.784       Low
cufflinks 2.083       High
cufflinks 1.236        

0 Strain