Gene : Glyma.05G113300 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1133
Name:  ? Glyma.05G113300 Secondary Identifier:  ? PAC:30527127
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G113300 0.5kb upstream 0.5kb upstream 2995 true Chr05: 30057584-30060578 Glycine max
Glyma.05G113300 0.5kb upstream 0.5kb upstream 500 false Chr05: 30057584-30058083 Glycine max
Glyma.05G113300 0.5kb downstream 0.5kb downstream 2995 true Chr05: 30058084-30061078 Glycine max
Glyma.05G113300 0.5kb downstream 0.5kb downstream 500 false Chr05: 30060579-30061078 Glycine max
Glyma.05G113300 1.0kb upstream 1.0kb upstream 3495 true Chr05: 30057084-30060578 Glycine max
Glyma.05G113300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 30057084-30058083 Glycine max
Glyma.05G113300 1.0kb downstream 1.0kb downstream 3495 true Chr05: 30058084-30061578 Glycine max
Glyma.05G113300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 30060579-30061578 Glycine max
Glyma.05G113300 2.0kb upstream 2.0kb upstream 4495 true Chr05: 30056084-30060578 Glycine max
Glyma.05G113300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 30056084-30058083 Glycine max
Glyma.05G113300 2.0kb downstream 2.0kb downstream 4495 true Chr05: 30058084-30062578 Glycine max
Glyma.05G113300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 30060579-30062578 Glycine max
Glyma.05G113300 5.0kb upstream 5.0kb upstream 7495 true Chr05: 30053084-30060578 Glycine max
Glyma.05G113300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 30053084-30058083 Glycine max
Glyma.05G113300 5.0kb downstream 5.0kb downstream 7495 true Chr05: 30058084-30065578 Glycine max
Glyma.05G113300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 30060579-30065578 Glycine max
Glyma.05G113300 10.0kb upstream 10.0kb upstream 12495 true Chr05: 30048084-30060578 Glycine max
Glyma.05G113300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 30048084-30058083 Glycine max
Glyma.05G113300 10.0kb downstream 10.0kb downstream 12495 true Chr05: 30058084-30070578 Glycine max
Glyma.05G113300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 30060579-30070578 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304299 5265 Fabidae View MSA
124065827 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.5558 0.0 55.9422   High
cufflinks 11.133 0.0 29.7016   High
cufflinks 4.48239 0.0 12.4413    
cufflinks 5.21986 0.0 14.3274    
cufflinks 3.50821 0.0 10.0136    
cufflinks 1.87879 0.0 5.8222   Low
cufflinks 4.35075 0.0 12.1344    
cufflinks 4.60438 0.0 12.7609    
cufflinks 2.04694 0.0 6.26836   Low
cufflinks 3.147        
cufflinks 0.184       Low
cufflinks 6.54        
cufflinks 1.911        
cufflinks 2.776        
cufflinks 0.57        
cufflinks 20.379     High  
cufflinks 0.089       Low
cufflinks 8.184     High  
cufflinks 9.936     High  
cufflinks 31.833     High High
cufflinks 0.164       Low
cufflinks 29.314     High High
cufflinks 24.504     High High
cufflinks 0.357        
cufflinks 26.723     High High
cufflinks 0.157       Low

0 Strain