Gene : Glyma.05G108900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11751:SF431 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4-RELATED Genomic Order:  1089
Name:  ? Glyma.05G108900 Secondary Identifier:  ? PAC:30526317
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ETHYL-PWY Glycine max pathologic  
Gmax PWY-7270 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G108900 0.5kb upstream 0.5kb upstream 2599 true Chr05: 28858465-28861063 Glycine max
Glyma.05G108900 0.5kb upstream 0.5kb upstream 500 false Chr05: 28858465-28858964 Glycine max
Glyma.05G108900 0.5kb downstream 0.5kb downstream 2599 true Chr05: 28858965-28861563 Glycine max
Glyma.05G108900 0.5kb downstream 0.5kb downstream 500 false Chr05: 28861064-28861563 Glycine max
Glyma.05G108900 1.0kb upstream 1.0kb upstream 3099 true Chr05: 28857965-28861063 Glycine max
Glyma.05G108900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 28857965-28858964 Glycine max
Glyma.05G108900 1.0kb downstream 1.0kb downstream 3099 true Chr05: 28858965-28862063 Glycine max
Glyma.05G108900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 28861064-28862063 Glycine max
Glyma.05G108900 2.0kb upstream 2.0kb upstream 4099 true Chr05: 28856965-28861063 Glycine max
Glyma.05G108900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 28856965-28858964 Glycine max
Glyma.05G108900 2.0kb downstream 2.0kb downstream 4099 true Chr05: 28858965-28863063 Glycine max
Glyma.05G108900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 28861064-28863063 Glycine max
Glyma.05G108900 5.0kb upstream 5.0kb upstream 7099 true Chr05: 28853965-28861063 Glycine max
Glyma.05G108900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 28853965-28858964 Glycine max
Glyma.05G108900 5.0kb downstream 5.0kb downstream 7099 true Chr05: 28858965-28866063 Glycine max
Glyma.05G108900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 28861064-28866063 Glycine max
Glyma.05G108900 10.0kb upstream 10.0kb upstream 12099 true Chr05: 28848965-28861063 Glycine max
Glyma.05G108900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 28848965-28858964 Glycine max
Glyma.05G108900 10.0kb downstream 10.0kb downstream 12099 true Chr05: 28858965-28871063 Glycine max
Glyma.05G108900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 28861064-28871063 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313200 5265 Fabidae View MSA
124066319 5270 Rosid View MSA
123745403 5271 Pentapetalae View MSA
122791160 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.189645 0.0 0.729414 Low  
cufflinks 0.408836 0.0 1.52042    
cufflinks 0.178539 0.0 0.690139 Low  
cufflinks 0.20348 0.0 0.780738    
cufflinks 2.58273 0.0 8.05869   High
cufflinks 3.81927 0.0 11.3123   High
cufflinks 0.0683288 0.0 0.273325 Low Low
cufflinks 0.133524 0.0 0.521352 Low  
cufflinks 0.969843 0.0 3.41173    
cufflinks 0.153        
cufflinks 0.211        
cufflinks 0.08     Low Low
cufflinks 3.629       High
cufflinks 1.852       High
cufflinks 0.614        
cufflinks 0.138        
cufflinks 0.971        
cufflinks 0.03     Low Low
cufflinks 0.495        
cufflinks 0.143        
cufflinks 0.748        
cufflinks 0.205        
cufflinks 0.346        
cufflinks 0.19        
cufflinks 0.183        
cufflinks 0.854        

0 Strain