Gene : Glyma.05G110900 G. max Wm82.a2.v1
Defline:  (1 of 22) PTHR23042//PTHR23042:SF57 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS Genomic Order:  1109
Name:  ? Glyma.05G110900 Secondary Identifier:  ? PAC:30527239
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G110900 0.5kb upstream 0.5kb upstream 3005 true Chr05: 29512460-29515464 Glycine max
Glyma.05G110900 0.5kb upstream 0.5kb upstream 500 false Chr05: 29514965-29515464 Glycine max
Glyma.05G110900 0.5kb downstream 0.5kb downstream 3005 true Chr05: 29511960-29514964 Glycine max
Glyma.05G110900 0.5kb downstream 0.5kb downstream 500 false Chr05: 29511960-29512459 Glycine max
Glyma.05G110900 1.0kb upstream 1.0kb upstream 3505 true Chr05: 29512460-29515964 Glycine max
Glyma.05G110900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 29514965-29515964 Glycine max
Glyma.05G110900 1.0kb downstream 1.0kb downstream 3505 true Chr05: 29511460-29514964 Glycine max
Glyma.05G110900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 29511460-29512459 Glycine max
Glyma.05G110900 2.0kb upstream 2.0kb upstream 4505 true Chr05: 29512460-29516964 Glycine max
Glyma.05G110900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 29514965-29516964 Glycine max
Glyma.05G110900 2.0kb downstream 2.0kb downstream 4505 true Chr05: 29510460-29514964 Glycine max
Glyma.05G110900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 29510460-29512459 Glycine max
Glyma.05G110900 5.0kb upstream 5.0kb upstream 7505 true Chr05: 29512460-29519964 Glycine max
Glyma.05G110900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 29514965-29519964 Glycine max
Glyma.05G110900 5.0kb downstream 5.0kb downstream 7505 true Chr05: 29507460-29514964 Glycine max
Glyma.05G110900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 29507460-29512459 Glycine max
Glyma.05G110900 10.0kb upstream 10.0kb upstream 12505 true Chr05: 29512460-29524964 Glycine max
Glyma.05G110900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 29514965-29524964 Glycine max
Glyma.05G110900 10.0kb downstream 10.0kb downstream 12505 true Chr05: 29502460-29514964 Glycine max
Glyma.05G110900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 29502460-29512459 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313043 5265 Fabidae View MSA
124070459 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.985208 0.0 5.60124   Low
cufflinks 15.2192 0.0 52.9715    
cufflinks 4.44065 0.0 16.1335    
cufflinks 7.60127 0.0 28.4879    
cufflinks 28.982 0.0 103.458 High  
cufflinks 54.1573 0.0 191.774 High High
cufflinks 6.51667 0.0 22.0327    
cufflinks 7.86849 0.0 29.2939    
cufflinks 19.2039 0.0 66.5576    
cufflinks 8.853     High  
cufflinks 0.232       Low
cufflinks 7.061        
cufflinks 18.994     High High
cufflinks 19.623     High High
cufflinks 1.077        
cufflinks 1.409        
cufflinks 2.739        
cufflinks 5.42        
cufflinks 9.182     High  
cufflinks 1.263        
cufflinks 0.167       Low
cufflinks 1.666        
cufflinks 3.447        
cufflinks 0.231       Low
cufflinks 1.372        
cufflinks 0.874        

0 Strain