Gene : Glyma.05G117000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23335:SF12 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1-RELATED Genomic Order:  1170
Name:  ? Glyma.05G117000 Secondary Identifier:  ? PAC:30523769
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G117000 0.5kb upstream 0.5kb upstream 10956 true Chr05: 30980199-30991154 Glycine max
Glyma.05G117000 0.5kb upstream 0.5kb upstream 500 false Chr05: 30990655-30991154 Glycine max
Glyma.05G117000 0.5kb downstream 0.5kb downstream 10956 true Chr05: 30979699-30990654 Glycine max
Glyma.05G117000 0.5kb downstream 0.5kb downstream 500 false Chr05: 30979699-30980198 Glycine max
Glyma.05G117000 1.0kb upstream 1.0kb upstream 11456 true Chr05: 30980199-30991654 Glycine max
Glyma.05G117000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 30990655-30991654 Glycine max
Glyma.05G117000 1.0kb downstream 1.0kb downstream 11456 true Chr05: 30979199-30990654 Glycine max
Glyma.05G117000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 30979199-30980198 Glycine max
Glyma.05G117000 2.0kb upstream 2.0kb upstream 12456 true Chr05: 30980199-30992654 Glycine max
Glyma.05G117000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 30990655-30992654 Glycine max
Glyma.05G117000 2.0kb downstream 2.0kb downstream 12456 true Chr05: 30978199-30990654 Glycine max
Glyma.05G117000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 30978199-30980198 Glycine max
Glyma.05G117000 5.0kb upstream 5.0kb upstream 15456 true Chr05: 30980199-30995654 Glycine max
Glyma.05G117000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 30990655-30995654 Glycine max
Glyma.05G117000 5.0kb downstream 5.0kb downstream 15456 true Chr05: 30975199-30990654 Glycine max
Glyma.05G117000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 30975199-30980198 Glycine max
Glyma.05G117000 10.0kb upstream 10.0kb upstream 20456 true Chr05: 30980199-31000654 Glycine max
Glyma.05G117000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 30990655-31000654 Glycine max
Glyma.05G117000 10.0kb downstream 10.0kb downstream 20456 true Chr05: 30970199-30990654 Glycine max
Glyma.05G117000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 30970199-30980198 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3777 0.0 36.2401    
cufflinks 9.21186 0.0 24.611    
cufflinks 28.3787 0.0 83.4926 High High
cufflinks 11.8887 0.0 32.029    
cufflinks 9.41998 0.0 25.1718    
cufflinks 14.0186 0.0 38.0945    
cufflinks 10.2011 0.0 27.3028    
cufflinks 13.296 0.0 36.0199    
cufflinks 11.1961 0.0 30.0753    
cufflinks 5.367        
cufflinks 12.698     High High
cufflinks 7.375     High  
cufflinks 4.94        
cufflinks 4.038       Low
cufflinks 11.188     High High
cufflinks 5.397        
cufflinks 12.584     High High
cufflinks 5.737        
cufflinks 5.419        
cufflinks 4.296        
cufflinks 9.03     High  
cufflinks 4.832        
cufflinks 4.047       Low
cufflinks 11.657     High High
cufflinks 3.983       Low
cufflinks 11.968     High High

0 Strain