Gene : Glyma.05G117400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR24093:SF124 - COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC Genomic Order:  1174
Name:  ? Glyma.05G117400 Secondary Identifier:  ? PAC:30523965
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G117400 0.5kb upstream 0.5kb upstream 15792 true Chr05: 31039576-31055367 Glycine max
Glyma.05G117400 0.5kb upstream 0.5kb upstream 500 false Chr05: 31039576-31040075 Glycine max
Glyma.05G117400 0.5kb downstream 0.5kb downstream 15792 true Chr05: 31040076-31055867 Glycine max
Glyma.05G117400 0.5kb downstream 0.5kb downstream 500 false Chr05: 31055368-31055867 Glycine max
Glyma.05G117400 1.0kb upstream 1.0kb upstream 16292 true Chr05: 31039076-31055367 Glycine max
Glyma.05G117400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 31039076-31040075 Glycine max
Glyma.05G117400 1.0kb downstream 1.0kb downstream 16292 true Chr05: 31040076-31056367 Glycine max
Glyma.05G117400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 31055368-31056367 Glycine max
Glyma.05G117400 2.0kb upstream 2.0kb upstream 17292 true Chr05: 31038076-31055367 Glycine max
Glyma.05G117400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 31038076-31040075 Glycine max
Glyma.05G117400 2.0kb downstream 2.0kb downstream 17292 true Chr05: 31040076-31057367 Glycine max
Glyma.05G117400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 31055368-31057367 Glycine max
Glyma.05G117400 5.0kb upstream 5.0kb upstream 20292 true Chr05: 31035076-31055367 Glycine max
Glyma.05G117400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 31035076-31040075 Glycine max
Glyma.05G117400 5.0kb downstream 5.0kb downstream 20292 true Chr05: 31040076-31060367 Glycine max
Glyma.05G117400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 31055368-31060367 Glycine max
Glyma.05G117400 10.0kb upstream 10.0kb upstream 25292 true Chr05: 31030076-31055367 Glycine max
Glyma.05G117400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 31030076-31040075 Glycine max
Glyma.05G117400 10.0kb downstream 10.0kb downstream 25292 true Chr05: 31040076-31065367 Glycine max
Glyma.05G117400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 31055368-31065367 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313280 5265 Fabidae View MSA
124074915 5270 Rosid View MSA
123753356 5271 Pentapetalae View MSA
122796910 5272 Eudicot View MSA
122047959 5273 Angiosperm View MSA
121350289 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.05884 0.0 11.398   High
cufflinks 2.57355 0.0 7.6323    
cufflinks 3.19099 0.0 9.15363    
cufflinks 4.3503 0.0 12.116   High
cufflinks 1.53468 0.0 4.90722   Low
cufflinks 1.30718 0.0 4.26463   Low
cufflinks 2.36959 0.0 7.1184    
cufflinks 2.05109 0.0 6.26659    
cufflinks 2.51849 0.0 7.48353    
cufflinks 0.535        
cufflinks 0.19       Low
cufflinks 0.86        
cufflinks 0.234       Low
cufflinks 0.279        
cufflinks 0.241       Low
cufflinks 0.919        
cufflinks 0.327        
cufflinks 1.026       High
cufflinks 0.787        
cufflinks 0.876        
cufflinks 0.275        
cufflinks 0.89        
cufflinks 1.326       High
cufflinks 0.267        
cufflinks 0.799        
cufflinks 0.248       Low

0 Strain