Gene : Glyma.05G119000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21649//PTHR21649:SF28 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  1190
Name:  ? Glyma.05G119000 Secondary Identifier:  ? PAC:30524502
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G119000 0.5kb upstream 0.5kb upstream 1675 true Chr05: 31171336-31173010 Glycine max
Glyma.05G119000 0.5kb upstream 0.5kb upstream 500 false Chr05: 31172511-31173010 Glycine max
Glyma.05G119000 0.5kb downstream 0.5kb downstream 1675 true Chr05: 31170836-31172510 Glycine max
Glyma.05G119000 0.5kb downstream 0.5kb downstream 500 false Chr05: 31170836-31171335 Glycine max
Glyma.05G119000 1.0kb upstream 1.0kb upstream 2175 true Chr05: 31171336-31173510 Glycine max
Glyma.05G119000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 31172511-31173510 Glycine max
Glyma.05G119000 1.0kb downstream 1.0kb downstream 2175 true Chr05: 31170336-31172510 Glycine max
Glyma.05G119000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 31170336-31171335 Glycine max
Glyma.05G119000 2.0kb upstream 2.0kb upstream 3175 true Chr05: 31171336-31174510 Glycine max
Glyma.05G119000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 31172511-31174510 Glycine max
Glyma.05G119000 2.0kb downstream 2.0kb downstream 3175 true Chr05: 31169336-31172510 Glycine max
Glyma.05G119000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 31169336-31171335 Glycine max
Glyma.05G119000 5.0kb upstream 5.0kb upstream 6175 true Chr05: 31171336-31177510 Glycine max
Glyma.05G119000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 31172511-31177510 Glycine max
Glyma.05G119000 5.0kb downstream 5.0kb downstream 6175 true Chr05: 31166336-31172510 Glycine max
Glyma.05G119000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 31166336-31171335 Glycine max
Glyma.05G119000 10.0kb upstream 10.0kb upstream 11175 true Chr05: 31171336-31182510 Glycine max
Glyma.05G119000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 31172511-31182510 Glycine max
Glyma.05G119000 10.0kb downstream 10.0kb downstream 11175 true Chr05: 31161336-31172510 Glycine max
Glyma.05G119000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 31161336-31171335 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311763 5265 Fabidae View MSA
124068665 5270 Rosid View MSA
123745282 5271 Pentapetalae View MSA
122788201 5272 Eudicot View MSA
122042531 5273 Angiosperm View MSA
121350849 5274 Embryophyte View MSA
123381903 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.20274 0.0 4.45456    
cufflinks 6.3226 0.0 20.1933    
cufflinks 0.517951 0.0 1.99161   Low
cufflinks 3.44049 0.0 11.8294    
cufflinks 0.865226 0.0 3.25125    
cufflinks 0.569128 0.0 2.18021   Low
cufflinks 14.1529 0.0 40.3009   High
cufflinks 2.29568 0.0 8.1576    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.025        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.885        
cufflinks 0.015     Low Low
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 20.948     High  
cufflinks 0.016     Low Low
cufflinks 4.462        
cufflinks 11.23     High  
cufflinks 19.439     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 24.219     High  
cufflinks 17.62     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 24.224     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain