Gene : Glyma.05G143800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31384:SF3 - AUXIN RESPONSE FACTOR 6 Genomic Order:  1438
Name:  ? Glyma.05G143800 Secondary Identifier:  ? PAC:30525738
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G143800 0.5kb upstream 0.5kb upstream 8091 true Chr05: 33756023-33764113 Glycine max
Glyma.05G143800 0.5kb upstream 0.5kb upstream 500 false Chr05: 33763614-33764113 Glycine max
Glyma.05G143800 0.5kb downstream 0.5kb downstream 8091 true Chr05: 33755523-33763613 Glycine max
Glyma.05G143800 0.5kb downstream 0.5kb downstream 500 false Chr05: 33755523-33756022 Glycine max
Glyma.05G143800 1.0kb upstream 1.0kb upstream 8591 true Chr05: 33756023-33764613 Glycine max
Glyma.05G143800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 33763614-33764613 Glycine max
Glyma.05G143800 1.0kb downstream 1.0kb downstream 8591 true Chr05: 33755023-33763613 Glycine max
Glyma.05G143800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 33755023-33756022 Glycine max
Glyma.05G143800 2.0kb upstream 2.0kb upstream 9591 true Chr05: 33756023-33765613 Glycine max
Glyma.05G143800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 33763614-33765613 Glycine max
Glyma.05G143800 2.0kb downstream 2.0kb downstream 9591 true Chr05: 33754023-33763613 Glycine max
Glyma.05G143800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 33754023-33756022 Glycine max
Glyma.05G143800 5.0kb upstream 5.0kb upstream 12591 true Chr05: 33756023-33768613 Glycine max
Glyma.05G143800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 33763614-33768613 Glycine max
Glyma.05G143800 5.0kb downstream 5.0kb downstream 12591 true Chr05: 33751023-33763613 Glycine max
Glyma.05G143800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 33751023-33756022 Glycine max
Glyma.05G143800 10.0kb upstream 10.0kb upstream 17591 true Chr05: 33756023-33773613 Glycine max
Glyma.05G143800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 33763614-33773613 Glycine max
Glyma.05G143800 10.0kb downstream 10.0kb downstream 17591 true Chr05: 33746023-33763613 Glycine max
Glyma.05G143800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 33746023-33756022 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239345 5265 Fabidae Singleton cluster - no MSA
123984600 5270 Rosid Singleton cluster - no MSA
123749111 5271 Pentapetalae View MSA
122793528 5272 Eudicot View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.4333 0.0 39.7202    
cufflinks 30.6831 0.0 122.74 High  
cufflinks 18.1597 0.0 66.5187    
cufflinks 44.1502 0.0 203.716 High High
cufflinks 19.1695 0.0 71.3093    
cufflinks 9.05606 0.0 32.5657   Low
cufflinks 11.6415 0.0 40.5306    
cufflinks 39.7173 0.0 178.376 High High
cufflinks 14.8538 0.0 53.0639    
cufflinks 5.834       High
cufflinks 2.18        
cufflinks 4.901        
cufflinks 3.163        
cufflinks 3.462        
cufflinks 1.458       Low
cufflinks 3.369        
cufflinks 1.999       Low
cufflinks 6.885       High
cufflinks 7.412       High
cufflinks 3.584        
cufflinks 2.693        
cufflinks 3.815        
cufflinks 2.668        
cufflinks 3.132        
cufflinks 3.54        
cufflinks 1.817       Low

0 Strain