Gene : Glyma.05G153800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22629 - ARP2/3 COMPLEX 20 KD SUBUNIT Genomic Order:  1538
Name:  ? Glyma.05G153800 Secondary Identifier:  ? PAC:30525357
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G153800 0.5kb upstream 0.5kb upstream 5473 true Chr05: 34718598-34724070 Glycine max
Glyma.05G153800 0.5kb upstream 0.5kb upstream 500 false Chr05: 34723571-34724070 Glycine max
Glyma.05G153800 0.5kb downstream 0.5kb downstream 5473 true Chr05: 34718098-34723570 Glycine max
Glyma.05G153800 0.5kb downstream 0.5kb downstream 500 false Chr05: 34718098-34718597 Glycine max
Glyma.05G153800 1.0kb upstream 1.0kb upstream 5973 true Chr05: 34718598-34724570 Glycine max
Glyma.05G153800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 34723571-34724570 Glycine max
Glyma.05G153800 1.0kb downstream 1.0kb downstream 5973 true Chr05: 34717598-34723570 Glycine max
Glyma.05G153800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 34717598-34718597 Glycine max
Glyma.05G153800 2.0kb upstream 2.0kb upstream 6973 true Chr05: 34718598-34725570 Glycine max
Glyma.05G153800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 34723571-34725570 Glycine max
Glyma.05G153800 2.0kb downstream 2.0kb downstream 6973 true Chr05: 34716598-34723570 Glycine max
Glyma.05G153800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 34716598-34718597 Glycine max
Glyma.05G153800 5.0kb upstream 5.0kb upstream 9973 true Chr05: 34718598-34728570 Glycine max
Glyma.05G153800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 34723571-34728570 Glycine max
Glyma.05G153800 5.0kb downstream 5.0kb downstream 9973 true Chr05: 34713598-34723570 Glycine max
Glyma.05G153800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 34713598-34718597 Glycine max
Glyma.05G153800 10.0kb upstream 10.0kb upstream 14973 true Chr05: 34718598-34733570 Glycine max
Glyma.05G153800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 34723571-34733570 Glycine max
Glyma.05G153800 10.0kb downstream 10.0kb downstream 14973 true Chr05: 34708598-34723570 Glycine max
Glyma.05G153800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 34708598-34718597 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239398 5265 Fabidae Singleton cluster - no MSA
124070317 5270 Rosid View MSA
123743957 5271 Pentapetalae View MSA
122793284 5272 Eudicot View MSA
122047999 5273 Angiosperm View MSA
121345862 5274 Embryophyte View MSA
123425617 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.15436 0.0 14.9754   Low
cufflinks 9.80311 0.0 39.8939    
cufflinks 2.71268 0.0 10.7066   Low
cufflinks 7.69536 0.0 29.0075    
cufflinks 8.50404 0.0 31.1634    
cufflinks 7.31435 0.0 27.7138    
cufflinks 9.54888 0.0 33.9347    
cufflinks 5.21181 0.0 17.1088    
cufflinks 8.72131 0.0 36.8913    
cufflinks 0.448        
cufflinks 0.181       Low
cufflinks 0.495        
cufflinks 0.925        
cufflinks 1.128       High
cufflinks 0.279       Low
cufflinks 0.826        
cufflinks 0.376        
cufflinks 0.825        
cufflinks 1.012        
cufflinks 0.796        
cufflinks 0.283       Low
cufflinks 0.865        
cufflinks 0.938        
cufflinks 0.165       Low
cufflinks 0.939        
cufflinks 0.364        

0 Strain