Gene : Glyma.05G155200 G. max Wm82.a2.v1
Defline:  (1 of 2) PF13812//PF14432 - Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1552
Name:  ? Glyma.05G155200 Secondary Identifier:  ? PAC:30527275
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G155200 0.5kb upstream 0.5kb upstream 4692 true Chr05: 34814228-34818919 Glycine max
Glyma.05G155200 0.5kb upstream 0.5kb upstream 500 false Chr05: 34814228-34814727 Glycine max
Glyma.05G155200 0.5kb downstream 0.5kb downstream 4692 true Chr05: 34814728-34819419 Glycine max
Glyma.05G155200 0.5kb downstream 0.5kb downstream 500 false Chr05: 34818920-34819419 Glycine max
Glyma.05G155200 1.0kb upstream 1.0kb upstream 5192 true Chr05: 34813728-34818919 Glycine max
Glyma.05G155200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 34813728-34814727 Glycine max
Glyma.05G155200 1.0kb downstream 1.0kb downstream 5192 true Chr05: 34814728-34819919 Glycine max
Glyma.05G155200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 34818920-34819919 Glycine max
Glyma.05G155200 2.0kb upstream 2.0kb upstream 6192 true Chr05: 34812728-34818919 Glycine max
Glyma.05G155200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 34812728-34814727 Glycine max
Glyma.05G155200 2.0kb downstream 2.0kb downstream 6192 true Chr05: 34814728-34820919 Glycine max
Glyma.05G155200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 34818920-34820919 Glycine max
Glyma.05G155200 5.0kb upstream 5.0kb upstream 9192 true Chr05: 34809728-34818919 Glycine max
Glyma.05G155200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 34809728-34814727 Glycine max
Glyma.05G155200 5.0kb downstream 5.0kb downstream 9192 true Chr05: 34814728-34823919 Glycine max
Glyma.05G155200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 34818920-34823919 Glycine max
Glyma.05G155200 10.0kb upstream 10.0kb upstream 14192 true Chr05: 34804728-34818919 Glycine max
Glyma.05G155200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 34804728-34814727 Glycine max
Glyma.05G155200 10.0kb downstream 10.0kb downstream 14192 true Chr05: 34814728-34828919 Glycine max
Glyma.05G155200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 34818920-34828919 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299130 5265 Fabidae View MSA
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.40568 0.0 22.5501    
cufflinks 7.41716 0.0 19.994    
cufflinks 7.41294 0.0 19.9496    
cufflinks 6.38057 0.0 17.3267   Low
cufflinks 8.62465 0.0 23.1273    
cufflinks 8.36919 0.0 22.4528    
cufflinks 5.81621 0.0 15.92   Low
cufflinks 7.50848 0.0 20.2263    
cufflinks 9.11828 0.0 24.403   High
cufflinks 5.043        
cufflinks 2.762       Low
cufflinks 5.66        
cufflinks 8.022     High High
cufflinks 10.131     High High
cufflinks 3.063       Low
cufflinks 4.277        
cufflinks 2.978       Low
cufflinks 6.043        
cufflinks 5.726        
cufflinks 4.761        
cufflinks 3.358        
cufflinks 4.552        
cufflinks 5.367        
cufflinks 3.67        
cufflinks 4.386        
cufflinks 2.996       Low

0 Strain