Gene : Glyma.05G165300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12758:SF20 - PEPTIDASE-C1 DOMAIN-CONTAINING PROTEIN Genomic Order:  1653
Name:  ? Glyma.05G165300 Secondary Identifier:  ? PAC:30525795
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G165300 0.5kb upstream 0.5kb upstream 7767 true Chr05: 35593151-35600917 Glycine max
Glyma.05G165300 0.5kb upstream 0.5kb upstream 500 false Chr05: 35593151-35593650 Glycine max
Glyma.05G165300 0.5kb downstream 0.5kb downstream 7767 true Chr05: 35593651-35601417 Glycine max
Glyma.05G165300 0.5kb downstream 0.5kb downstream 500 false Chr05: 35600918-35601417 Glycine max
Glyma.05G165300 1.0kb upstream 1.0kb upstream 8267 true Chr05: 35592651-35600917 Glycine max
Glyma.05G165300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35592651-35593650 Glycine max
Glyma.05G165300 1.0kb downstream 1.0kb downstream 8267 true Chr05: 35593651-35601917 Glycine max
Glyma.05G165300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35600918-35601917 Glycine max
Glyma.05G165300 2.0kb upstream 2.0kb upstream 9267 true Chr05: 35591651-35600917 Glycine max
Glyma.05G165300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35591651-35593650 Glycine max
Glyma.05G165300 2.0kb downstream 2.0kb downstream 9267 true Chr05: 35593651-35602917 Glycine max
Glyma.05G165300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35600918-35602917 Glycine max
Glyma.05G165300 5.0kb upstream 5.0kb upstream 12267 true Chr05: 35588651-35600917 Glycine max
Glyma.05G165300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35588651-35593650 Glycine max
Glyma.05G165300 5.0kb downstream 5.0kb downstream 12267 true Chr05: 35593651-35605917 Glycine max
Glyma.05G165300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35600918-35605917 Glycine max
Glyma.05G165300 10.0kb upstream 10.0kb upstream 17267 true Chr05: 35583651-35600917 Glycine max
Glyma.05G165300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35583651-35593650 Glycine max
Glyma.05G165300 10.0kb downstream 10.0kb downstream 17267 true Chr05: 35593651-35610917 Glycine max
Glyma.05G165300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35600918-35610917 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300528 5265 Fabidae View MSA
124065428 5270 Rosid View MSA
123746895 5271 Pentapetalae View MSA
122790736 5272 Eudicot View MSA
122047754 5273 Angiosperm View MSA
121350111 5274 Embryophyte View MSA
123424635 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.1027 0.0 55.0754    
cufflinks 26.4981 0.0 74.3741 High High
cufflinks 24.471 0.0 68.2278 High  
cufflinks 19.109 0.0 52.1765    
cufflinks 24.2899 0.0 67.7678 High  
cufflinks 14.7416 0.0 39.6618   Low
cufflinks 29.168 0.0 82.8998 High High
cufflinks 16.8073 0.0 45.5126    
cufflinks 17.3797 0.0 47.1476    
cufflinks 5.412        
cufflinks 4.99       Low
cufflinks 9.316     High  
cufflinks 8.689     High  
cufflinks 10.307     High  
cufflinks 4.2       Low
cufflinks 9.726     High  
cufflinks 5.373       Low
cufflinks 9.157     High  
cufflinks 12.454     High High
cufflinks 9.612     High  
cufflinks 4.867       Low
cufflinks 9.799     High  
cufflinks 8.079     High  
cufflinks 5.695        
cufflinks 9.076     High  
cufflinks 6.471     High  

0 Strain