Gene : Glyma.05G175100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22951//PTHR22951:SF18 - CLATHRIN ASSEMBLY PROTEIN Genomic Order:  1751
Name:  ? Glyma.05G175100 Secondary Identifier:  ? PAC:30525479
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G175100 0.5kb upstream 0.5kb upstream 3348 true Chr05: 36396536-36399883 Glycine max
Glyma.05G175100 0.5kb upstream 0.5kb upstream 500 false Chr05: 36399384-36399883 Glycine max
Glyma.05G175100 0.5kb downstream 0.5kb downstream 3348 true Chr05: 36396036-36399383 Glycine max
Glyma.05G175100 0.5kb downstream 0.5kb downstream 500 false Chr05: 36396036-36396535 Glycine max
Glyma.05G175100 1.0kb upstream 1.0kb upstream 3848 true Chr05: 36396536-36400383 Glycine max
Glyma.05G175100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36399384-36400383 Glycine max
Glyma.05G175100 1.0kb downstream 1.0kb downstream 3848 true Chr05: 36395536-36399383 Glycine max
Glyma.05G175100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36395536-36396535 Glycine max
Glyma.05G175100 2.0kb upstream 2.0kb upstream 4848 true Chr05: 36396536-36401383 Glycine max
Glyma.05G175100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36399384-36401383 Glycine max
Glyma.05G175100 2.0kb downstream 2.0kb downstream 4848 true Chr05: 36394536-36399383 Glycine max
Glyma.05G175100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36394536-36396535 Glycine max
Glyma.05G175100 5.0kb upstream 5.0kb upstream 7848 true Chr05: 36396536-36404383 Glycine max
Glyma.05G175100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36399384-36404383 Glycine max
Glyma.05G175100 5.0kb downstream 5.0kb downstream 7848 true Chr05: 36391536-36399383 Glycine max
Glyma.05G175100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36391536-36396535 Glycine max
Glyma.05G175100 10.0kb upstream 10.0kb upstream 12848 true Chr05: 36396536-36409383 Glycine max
Glyma.05G175100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36399384-36409383 Glycine max
Glyma.05G175100 10.0kb downstream 10.0kb downstream 12848 true Chr05: 36386536-36399383 Glycine max
Glyma.05G175100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36386536-36396535 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310965 5265 Fabidae View MSA
124071076 5270 Rosid View MSA
123746532 5271 Pentapetalae View MSA
122793049 5272 Eudicot View MSA
122050883 5273 Angiosperm View MSA
121351758 5274 Embryophyte View MSA
123382309 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.52087 0.0 4.87824    
cufflinks 1.38239 0.0 4.4986    
cufflinks 2.06507 0.0 6.34051    
cufflinks 1.93246 0.0 5.98509    
cufflinks 6.05275 0.0 16.4665   High
cufflinks 3.99729 0.0 11.273    
cufflinks 0.882967 0.0 3.03121   Low
cufflinks 1.9562 0.0 6.05256    
cufflinks 5.7736 0.0 15.7633   High
cufflinks 1.134        
cufflinks 1.34        
cufflinks 1.895        
cufflinks 0.804        
cufflinks 0.228       Low
cufflinks 0.576        
cufflinks 0.769        
cufflinks 5.715       High
cufflinks 0.902        
cufflinks 0.966        
cufflinks 0.965        
cufflinks 1.362        
cufflinks 0.818        
cufflinks 0.642        
cufflinks 1.732        
cufflinks 0.569        
cufflinks 1.303        

0 Strain