Gene : Glyma.05G175900 G. max Wm82.a2.v1
Defline:  (1 of 4) PF12070 - Protein of unknown function (DUF3550/UPF0682) (DUF3550) Genomic Order:  1759
Name:  ? Glyma.05G175900 Secondary Identifier:  ? PAC:30525675
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G175900 0.5kb upstream 0.5kb upstream 6549 true Chr05: 36498687-36505235 Glycine max
Glyma.05G175900 0.5kb upstream 0.5kb upstream 500 false Chr05: 36498687-36499186 Glycine max
Glyma.05G175900 0.5kb downstream 0.5kb downstream 6549 true Chr05: 36499187-36505735 Glycine max
Glyma.05G175900 0.5kb downstream 0.5kb downstream 500 false Chr05: 36505236-36505735 Glycine max
Glyma.05G175900 1.0kb upstream 1.0kb upstream 7049 true Chr05: 36498187-36505235 Glycine max
Glyma.05G175900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36498187-36499186 Glycine max
Glyma.05G175900 1.0kb downstream 1.0kb downstream 7049 true Chr05: 36499187-36506235 Glycine max
Glyma.05G175900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36505236-36506235 Glycine max
Glyma.05G175900 2.0kb upstream 2.0kb upstream 8049 true Chr05: 36497187-36505235 Glycine max
Glyma.05G175900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36497187-36499186 Glycine max
Glyma.05G175900 2.0kb downstream 2.0kb downstream 8049 true Chr05: 36499187-36507235 Glycine max
Glyma.05G175900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36505236-36507235 Glycine max
Glyma.05G175900 5.0kb upstream 5.0kb upstream 11049 true Chr05: 36494187-36505235 Glycine max
Glyma.05G175900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36494187-36499186 Glycine max
Glyma.05G175900 5.0kb downstream 5.0kb downstream 11049 true Chr05: 36499187-36510235 Glycine max
Glyma.05G175900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36505236-36510235 Glycine max
Glyma.05G175900 10.0kb upstream 10.0kb upstream 16049 true Chr05: 36489187-36505235 Glycine max
Glyma.05G175900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36489187-36499186 Glycine max
Glyma.05G175900 10.0kb downstream 10.0kb downstream 16049 true Chr05: 36499187-36515235 Glycine max
Glyma.05G175900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36505236-36515235 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299201 5265 Fabidae View MSA
124066790 5270 Rosid View MSA
123739953 5271 Pentapetalae View MSA
122791908 5272 Eudicot View MSA
122047130 5273 Angiosperm View MSA
121349803 5274 Embryophyte View MSA
123425537 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.51092 0.0 20.2842    
cufflinks 4.06918 0.0 11.5606    
cufflinks 2.54611 0.0 7.68873   Low
cufflinks 7.05072 0.0 19.1121    
cufflinks 6.62373 0.0 17.99    
cufflinks 12.1722 0.0 32.4738   High
cufflinks 5.00877 0.0 13.9231    
cufflinks 7.63863 0.0 20.6244    
cufflinks 5.85997 0.0 16.0613    
cufflinks 2.877        
cufflinks 2.57        
cufflinks 1.557       Low
cufflinks 3.333        
cufflinks 2.676        
cufflinks 3.753       High
cufflinks 1.823       Low
cufflinks 4.757       High
cufflinks 2.164        
cufflinks 2.891        
cufflinks 1.616       Low
cufflinks 2.669        
cufflinks 2.077        
cufflinks 2.574        
cufflinks 2.546        
cufflinks 1.566       Low
cufflinks 4.23       High

0 Strain