Gene : Glyma.05G176300 G. max Wm82.a2.v1
Defline:  (1 of 42) KOG0087 - GTPase Rab11/YPT3, small G protein superfamily Genomic Order:  1763
Name:  ? Glyma.05G176300 Secondary Identifier:  ? PAC:30523805
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G176300 0.5kb upstream 0.5kb upstream 3793 true Chr05: 36535180-36538972 Glycine max
Glyma.05G176300 0.5kb upstream 0.5kb upstream 500 false Chr05: 36538473-36538972 Glycine max
Glyma.05G176300 0.5kb downstream 0.5kb downstream 3793 true Chr05: 36534680-36538472 Glycine max
Glyma.05G176300 0.5kb downstream 0.5kb downstream 500 false Chr05: 36534680-36535179 Glycine max
Glyma.05G176300 1.0kb upstream 1.0kb upstream 4293 true Chr05: 36535180-36539472 Glycine max
Glyma.05G176300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36538473-36539472 Glycine max
Glyma.05G176300 1.0kb downstream 1.0kb downstream 4293 true Chr05: 36534180-36538472 Glycine max
Glyma.05G176300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36534180-36535179 Glycine max
Glyma.05G176300 2.0kb upstream 2.0kb upstream 5293 true Chr05: 36535180-36540472 Glycine max
Glyma.05G176300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36538473-36540472 Glycine max
Glyma.05G176300 2.0kb downstream 2.0kb downstream 5293 true Chr05: 36533180-36538472 Glycine max
Glyma.05G176300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36533180-36535179 Glycine max
Glyma.05G176300 5.0kb upstream 5.0kb upstream 8293 true Chr05: 36535180-36543472 Glycine max
Glyma.05G176300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36538473-36543472 Glycine max
Glyma.05G176300 5.0kb downstream 5.0kb downstream 8293 true Chr05: 36530180-36538472 Glycine max
Glyma.05G176300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36530180-36535179 Glycine max
Glyma.05G176300 10.0kb upstream 10.0kb upstream 13293 true Chr05: 36535180-36548472 Glycine max
Glyma.05G176300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36538473-36548472 Glycine max
Glyma.05G176300 10.0kb downstream 10.0kb downstream 13293 true Chr05: 36525180-36538472 Glycine max
Glyma.05G176300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36525180-36535179 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312719 5265 Fabidae View MSA
124067588 5270 Rosid View MSA
123750991 5271 Pentapetalae View MSA
122787491 5272 Eudicot View MSA
122047606 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.1519 0.0 62.201    
cufflinks 33.1441 0.0 122.201 High  
cufflinks 11.4867 0.0 49.6206   Low
cufflinks 33.1665 0.0 125.211 High  
cufflinks 35.3698 0.0 132.687 High  
cufflinks 48.4204 0.0 182.319 High  
cufflinks 11.1822 0.0 49.5032   Low
cufflinks 72.944 0.0 290.981 High High
cufflinks 25.7425 0.0 96.7727 High  
cufflinks 20.946     High High
cufflinks 2.95       Low
cufflinks 5.18        
cufflinks 7.551     High  
cufflinks 7.947     High  
cufflinks 3.089        
cufflinks 4.293        
cufflinks 18.456     High High
cufflinks 7.713     High  
cufflinks 9.185     High  
cufflinks 2.717       Low
cufflinks 5.421        
cufflinks 3.378        
cufflinks 3.47        
cufflinks 3.879        
cufflinks 2.82       Low
cufflinks 8.465     High  

0 Strain