Gene : Glyma.05G178200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23335:SF0 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR, ISOFORM F Genomic Order:  1782
Name:  ? Glyma.05G178200 Secondary Identifier:  ? PAC:30526755
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G178200 0.5kb upstream 0.5kb upstream 8569 true Chr05: 36640053-36648621 Glycine max
Glyma.05G178200 0.5kb upstream 0.5kb upstream 500 false Chr05: 36648122-36648621 Glycine max
Glyma.05G178200 0.5kb downstream 0.5kb downstream 8569 true Chr05: 36639553-36648121 Glycine max
Glyma.05G178200 0.5kb downstream 0.5kb downstream 500 false Chr05: 36639553-36640052 Glycine max
Glyma.05G178200 1.0kb upstream 1.0kb upstream 9069 true Chr05: 36640053-36649121 Glycine max
Glyma.05G178200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36648122-36649121 Glycine max
Glyma.05G178200 1.0kb downstream 1.0kb downstream 9069 true Chr05: 36639053-36648121 Glycine max
Glyma.05G178200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36639053-36640052 Glycine max
Glyma.05G178200 2.0kb upstream 2.0kb upstream 10069 true Chr05: 36640053-36650121 Glycine max
Glyma.05G178200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36648122-36650121 Glycine max
Glyma.05G178200 2.0kb downstream 2.0kb downstream 10069 true Chr05: 36638053-36648121 Glycine max
Glyma.05G178200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36638053-36640052 Glycine max
Glyma.05G178200 5.0kb upstream 5.0kb upstream 13069 true Chr05: 36640053-36653121 Glycine max
Glyma.05G178200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36648122-36653121 Glycine max
Glyma.05G178200 5.0kb downstream 5.0kb downstream 13069 true Chr05: 36635053-36648121 Glycine max
Glyma.05G178200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36635053-36640052 Glycine max
Glyma.05G178200 10.0kb upstream 10.0kb upstream 18069 true Chr05: 36640053-36658121 Glycine max
Glyma.05G178200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36648122-36658121 Glycine max
Glyma.05G178200 10.0kb downstream 10.0kb downstream 18069 true Chr05: 36630053-36648121 Glycine max
Glyma.05G178200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36630053-36640052 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.00638 0.0 17.4491   High
cufflinks 2.92973 0.0 11.2057    
cufflinks 3.73424 0.0 15.0729    
cufflinks 1.96613 0.0 8.35436    
cufflinks 2.08967 0.0 7.52815    
cufflinks 3.34577 0.0 12.3992    
cufflinks 1.55791 0.0 7.25365   Low
cufflinks 3.16494 0.0 11.9672    
cufflinks 2.20583 0.0 10.3536    
cufflinks 5.142       High
cufflinks 2.843        
cufflinks 1.251        
cufflinks 1.23        
cufflinks 0.404       Low
cufflinks 2.677        
cufflinks 1.149        
cufflinks 9.521     High High
cufflinks 0.976        
cufflinks 1.067        
cufflinks 0.695       Low
cufflinks 1.349        
cufflinks 0.803        
cufflinks 2.169        
cufflinks 1.651        
cufflinks 0.85        
cufflinks 4.654       High

0 Strain