Gene : Glyma.05G178600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12059 - RIBOSOMAL PROTEIN L23-RELATED Genomic Order:  1786
Name:  ? Glyma.05G178600 Secondary Identifier:  ? PAC:30526343
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G178600 0.5kb upstream 0.5kb upstream 4874 true Chr05: 36665423-36670296 Glycine max
Glyma.05G178600 0.5kb upstream 0.5kb upstream 500 false Chr05: 36669797-36670296 Glycine max
Glyma.05G178600 0.5kb downstream 0.5kb downstream 4874 true Chr05: 36664923-36669796 Glycine max
Glyma.05G178600 0.5kb downstream 0.5kb downstream 500 false Chr05: 36664923-36665422 Glycine max
Glyma.05G178600 1.0kb upstream 1.0kb upstream 5374 true Chr05: 36665423-36670796 Glycine max
Glyma.05G178600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36669797-36670796 Glycine max
Glyma.05G178600 1.0kb downstream 1.0kb downstream 5374 true Chr05: 36664423-36669796 Glycine max
Glyma.05G178600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36664423-36665422 Glycine max
Glyma.05G178600 2.0kb upstream 2.0kb upstream 6374 true Chr05: 36665423-36671796 Glycine max
Glyma.05G178600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36669797-36671796 Glycine max
Glyma.05G178600 2.0kb downstream 2.0kb downstream 6374 true Chr05: 36663423-36669796 Glycine max
Glyma.05G178600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36663423-36665422 Glycine max
Glyma.05G178600 5.0kb upstream 5.0kb upstream 9374 true Chr05: 36665423-36674796 Glycine max
Glyma.05G178600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36669797-36674796 Glycine max
Glyma.05G178600 5.0kb downstream 5.0kb downstream 9374 true Chr05: 36660423-36669796 Glycine max
Glyma.05G178600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36660423-36665422 Glycine max
Glyma.05G178600 10.0kb upstream 10.0kb upstream 14374 true Chr05: 36665423-36679796 Glycine max
Glyma.05G178600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36669797-36679796 Glycine max
Glyma.05G178600 10.0kb downstream 10.0kb downstream 14374 true Chr05: 36655423-36669796 Glycine max
Glyma.05G178600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36655423-36665422 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691029 5273 Angiosperm View MSA
122313500 5265 Fabidae View MSA
124037876 5270 Rosid View MSA
123646715 5271 Pentapetalae View MSA
122680771 5272 Eudicot View MSA
121349805 5274 Embryophyte View MSA
123426659 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.05772 0.0 3.91744    
cufflinks 0.827166 0.0 3.09757    
cufflinks 0.290661 0.0 1.1392   Low
cufflinks 0.271443 0.0 1.06548   Low
cufflinks 1.53264 0.0 5.54717    
cufflinks 1.4866 0.0 5.39619    
cufflinks 1.28312 0.0 4.69401    
cufflinks 0.230442 0.0 0.90933 Low Low
cufflinks 2.10405 0.0 7.45097   High
cufflinks 0.055     Low Low
cufflinks 0.148        
cufflinks 0.163        
cufflinks 0.486       High
cufflinks 0.84       High
cufflinks 0.056        
cufflinks 0.059     Low  
cufflinks 0.07        
cufflinks 0.111     Low  
cufflinks 0.202        
cufflinks 0.068     Low  
cufflinks 0.072        
cufflinks 0.093     Low  
cufflinks 0.092     Low  
cufflinks 0.154        
cufflinks 0.064     Low  
cufflinks 0.171        

0 Strain