Gene : Glyma.05G171600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24351:SF60 - PROTEIN KINASE PINOID Genomic Order:  1716
Name:  ? Glyma.05G171600 Secondary Identifier:  ? PAC:30527375
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G171600 0.5kb upstream 0.5kb upstream 2591 true Chr05: 36188124-36190714 Glycine max
Glyma.05G171600 0.5kb upstream 0.5kb upstream 500 false Chr05: 36188124-36188623 Glycine max
Glyma.05G171600 0.5kb downstream 0.5kb downstream 2591 true Chr05: 36188624-36191214 Glycine max
Glyma.05G171600 0.5kb downstream 0.5kb downstream 500 false Chr05: 36190715-36191214 Glycine max
Glyma.05G171600 1.0kb upstream 1.0kb upstream 3091 true Chr05: 36187624-36190714 Glycine max
Glyma.05G171600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36187624-36188623 Glycine max
Glyma.05G171600 1.0kb downstream 1.0kb downstream 3091 true Chr05: 36188624-36191714 Glycine max
Glyma.05G171600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36190715-36191714 Glycine max
Glyma.05G171600 2.0kb upstream 2.0kb upstream 4091 true Chr05: 36186624-36190714 Glycine max
Glyma.05G171600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36186624-36188623 Glycine max
Glyma.05G171600 2.0kb downstream 2.0kb downstream 4091 true Chr05: 36188624-36192714 Glycine max
Glyma.05G171600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36190715-36192714 Glycine max
Glyma.05G171600 5.0kb upstream 5.0kb upstream 7091 true Chr05: 36183624-36190714 Glycine max
Glyma.05G171600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36183624-36188623 Glycine max
Glyma.05G171600 5.0kb downstream 5.0kb downstream 7091 true Chr05: 36188624-36195714 Glycine max
Glyma.05G171600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36190715-36195714 Glycine max
Glyma.05G171600 10.0kb upstream 10.0kb upstream 12091 true Chr05: 36178624-36190714 Glycine max
Glyma.05G171600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36178624-36188623 Glycine max
Glyma.05G171600 10.0kb downstream 10.0kb downstream 12091 true Chr05: 36188624-36200714 Glycine max
Glyma.05G171600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36190715-36200714 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311643 5265 Fabidae View MSA
124067652 5270 Rosid View MSA
123738624 5271 Pentapetalae View MSA
122769929 5272 Eudicot View MSA
122046233 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310576 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.157397 0.0 0.612439 Low Low
cufflinks 2.12057 0.0 6.92722    
cufflinks 0.729812 0.0 2.65137    
cufflinks 6.47693 0.0 18.2162   High
cufflinks 0.645329 0.0 2.34219    
cufflinks 0.333458 0.0 1.25484    
cufflinks 1.47009 0.0 5.00656    
cufflinks 0.682993 0.0 2.48007    
cufflinks 0.191649 0.0 0.739159 Low Low
cufflinks 0.609        
cufflinks 0.017     Low Low
cufflinks 0.708        
cufflinks 0.383        
cufflinks 0.657        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.566        
cufflinks 0.029     Low Low
cufflinks 0.343        
cufflinks 1.295       High
cufflinks 0.189        
cufflinks 0.064        
cufflinks 0.387        
cufflinks 0.439        
cufflinks 0.009     Low Low
cufflinks 0.368        
cufflinks 0.076        

0 Strain