Gene : Glyma.05G172100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10794:SF52 - CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN Genomic Order:  1721
Name:  ? Glyma.05G172100 Secondary Identifier:  ? PAC:30524310
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G172100 0.5kb upstream 0.5kb upstream 2952 true Chr05: 36230624-36233575 Glycine max
Glyma.05G172100 0.5kb upstream 0.5kb upstream 500 false Chr05: 36230624-36231123 Glycine max
Glyma.05G172100 0.5kb downstream 0.5kb downstream 2952 true Chr05: 36231124-36234075 Glycine max
Glyma.05G172100 0.5kb downstream 0.5kb downstream 500 false Chr05: 36233576-36234075 Glycine max
Glyma.05G172100 1.0kb upstream 1.0kb upstream 3452 true Chr05: 36230124-36233575 Glycine max
Glyma.05G172100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36230124-36231123 Glycine max
Glyma.05G172100 1.0kb downstream 1.0kb downstream 3452 true Chr05: 36231124-36234575 Glycine max
Glyma.05G172100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36233576-36234575 Glycine max
Glyma.05G172100 2.0kb upstream 2.0kb upstream 4452 true Chr05: 36229124-36233575 Glycine max
Glyma.05G172100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36229124-36231123 Glycine max
Glyma.05G172100 2.0kb downstream 2.0kb downstream 4452 true Chr05: 36231124-36235575 Glycine max
Glyma.05G172100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36233576-36235575 Glycine max
Glyma.05G172100 5.0kb upstream 5.0kb upstream 7452 true Chr05: 36226124-36233575 Glycine max
Glyma.05G172100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36226124-36231123 Glycine max
Glyma.05G172100 5.0kb downstream 5.0kb downstream 7452 true Chr05: 36231124-36238575 Glycine max
Glyma.05G172100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36233576-36238575 Glycine max
Glyma.05G172100 10.0kb upstream 10.0kb upstream 12452 true Chr05: 36221124-36233575 Glycine max
Glyma.05G172100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36221124-36231123 Glycine max
Glyma.05G172100 10.0kb downstream 10.0kb downstream 12452 true Chr05: 36231124-36243575 Glycine max
Glyma.05G172100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36233576-36243575 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239509 5265 Fabidae Singleton cluster - no MSA
123984734 5270 Rosid Singleton cluster - no MSA
123742837 5271 Pentapetalae View MSA
122786342 5272 Eudicot View MSA
122044525 5273 Angiosperm View MSA
121344475 5274 Embryophyte View MSA
123426126 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.51343 0.0 12.2678   High
cufflinks 2.27901 0.0 8.21655    
cufflinks 1.4241 0.0 5.26818    
cufflinks 1.14224 0.0 4.27782    
cufflinks 0.804819 0.0 3.06044   Low
cufflinks 0.945408 0.0 3.56869    
cufflinks 1.58381 0.0 5.84334    
cufflinks 1.48663 0.0 5.49413    
cufflinks 1.30502 0.0 4.85303    
cufflinks 0.532        
cufflinks 0.244       Low
cufflinks 0.983        
cufflinks 0.439        
cufflinks 0.435        
cufflinks 0.294       Low
cufflinks 1.385       High
cufflinks 0.563        
cufflinks 1.477       High
cufflinks 1.013        
cufflinks 1.472       High
cufflinks 0.386        
cufflinks 1.509       High
cufflinks 1.03        
cufflinks 0.322       Low
cufflinks 1.37       High
cufflinks 0.277       Low

0 Strain