Gene : Glyma.05G172600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11937:SF31 - ACTIN-RELATED PROTEIN 3 Genomic Order:  1726
Name:  ? Glyma.05G172600 Secondary Identifier:  ? PAC:30524658
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G172600 0.5kb upstream 0.5kb upstream 5229 true Chr05: 36249908-36255136 Glycine max
Glyma.05G172600 0.5kb upstream 0.5kb upstream 500 false Chr05: 36254637-36255136 Glycine max
Glyma.05G172600 0.5kb downstream 0.5kb downstream 5229 true Chr05: 36249408-36254636 Glycine max
Glyma.05G172600 0.5kb downstream 0.5kb downstream 500 false Chr05: 36249408-36249907 Glycine max
Glyma.05G172600 1.0kb upstream 1.0kb upstream 5729 true Chr05: 36249908-36255636 Glycine max
Glyma.05G172600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36254637-36255636 Glycine max
Glyma.05G172600 1.0kb downstream 1.0kb downstream 5729 true Chr05: 36248908-36254636 Glycine max
Glyma.05G172600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36248908-36249907 Glycine max
Glyma.05G172600 2.0kb upstream 2.0kb upstream 6729 true Chr05: 36249908-36256636 Glycine max
Glyma.05G172600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36254637-36256636 Glycine max
Glyma.05G172600 2.0kb downstream 2.0kb downstream 6729 true Chr05: 36247908-36254636 Glycine max
Glyma.05G172600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36247908-36249907 Glycine max
Glyma.05G172600 5.0kb upstream 5.0kb upstream 9729 true Chr05: 36249908-36259636 Glycine max
Glyma.05G172600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36254637-36259636 Glycine max
Glyma.05G172600 5.0kb downstream 5.0kb downstream 9729 true Chr05: 36244908-36254636 Glycine max
Glyma.05G172600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36244908-36249907 Glycine max
Glyma.05G172600 10.0kb upstream 10.0kb upstream 14729 true Chr05: 36249908-36264636 Glycine max
Glyma.05G172600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36254637-36264636 Glycine max
Glyma.05G172600 10.0kb downstream 10.0kb downstream 14729 true Chr05: 36239908-36254636 Glycine max
Glyma.05G172600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36239908-36249907 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308719 5265 Fabidae View MSA
124062937 5270 Rosid View MSA
123745111 5271 Pentapetalae View MSA
122795624 5272 Eudicot View MSA
122045834 5273 Angiosperm View MSA
121348925 5274 Embryophyte View MSA
123426550 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.55171 0.0 29.1595    
cufflinks 9.14576 0.0 27.9828    
cufflinks 5.18021 0.0 17.3396   Low
cufflinks 10.746 0.0 32.4594    
cufflinks 12.7834 0.0 38.256    
cufflinks 16.6724 0.0 49.3147   High
cufflinks 7.40754 0.0 23.4923    
cufflinks 15.9936 0.0 47.4773   High
cufflinks 9.78895 0.0 29.8395    
cufflinks 7.517        
cufflinks 3.507        
cufflinks 4.767        
cufflinks 12.406     High High
cufflinks 15.028     High High
cufflinks 1.875       Low
cufflinks 4.528        
cufflinks 4.687        
cufflinks 7.617     High  
cufflinks 7.752     High  
cufflinks 3.661        
cufflinks 4.758        
cufflinks 4.589        
cufflinks 4.961        
cufflinks 6.476     High  
cufflinks 3.701        
cufflinks 3.759        

0 Strain