Gene : Glyma.05G188500 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00988//PF07722 - Carbamoyl-phosphate synthase small chain, CPSase domain (CPSase_sm_chain) // Peptidase C26 (Peptidase_C26) Genomic Order:  1885
Name:  ? Glyma.05G188500 Secondary Identifier:  ? PAC:30523938
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARGSYNBSUB-PWY Glycine max pathologic  
Gmax ARGSYN-PWY Glycine max pathologic  
Gmax CITRULBIO-PWY Glycine max pathologic  
Gmax GLUTAMINDEG-PWY Glycine max pathologic  
Gmax PWY0-162 Glycine max pathologic  
Gmax PWY-4984 Glycine max pathologic  
Gmax PWY-5686 Glycine max pathologic  
Gmax PWY-7211 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G188500 0.5kb upstream 0.5kb upstream 3391 true Chr05: 37444735-37448125 Glycine max
Glyma.05G188500 0.5kb upstream 0.5kb upstream 500 false Chr05: 37444735-37445234 Glycine max
Glyma.05G188500 0.5kb downstream 0.5kb downstream 3391 true Chr05: 37445235-37448625 Glycine max
Glyma.05G188500 0.5kb downstream 0.5kb downstream 500 false Chr05: 37448126-37448625 Glycine max
Glyma.05G188500 1.0kb upstream 1.0kb upstream 3891 true Chr05: 37444235-37448125 Glycine max
Glyma.05G188500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37444235-37445234 Glycine max
Glyma.05G188500 1.0kb downstream 1.0kb downstream 3891 true Chr05: 37445235-37449125 Glycine max
Glyma.05G188500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37448126-37449125 Glycine max
Glyma.05G188500 2.0kb upstream 2.0kb upstream 4891 true Chr05: 37443235-37448125 Glycine max
Glyma.05G188500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37443235-37445234 Glycine max
Glyma.05G188500 2.0kb downstream 2.0kb downstream 4891 true Chr05: 37445235-37450125 Glycine max
Glyma.05G188500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37448126-37450125 Glycine max
Glyma.05G188500 5.0kb upstream 5.0kb upstream 7891 true Chr05: 37440235-37448125 Glycine max
Glyma.05G188500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37440235-37445234 Glycine max
Glyma.05G188500 5.0kb downstream 5.0kb downstream 7891 true Chr05: 37445235-37453125 Glycine max
Glyma.05G188500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37448126-37453125 Glycine max
Glyma.05G188500 10.0kb upstream 10.0kb upstream 12891 true Chr05: 37435235-37448125 Glycine max
Glyma.05G188500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37435235-37445234 Glycine max
Glyma.05G188500 10.0kb downstream 10.0kb downstream 12891 true Chr05: 37445235-37458125 Glycine max
Glyma.05G188500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37448126-37458125 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313354 5265 Fabidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1519 0.0 37.8928   High
cufflinks 9.86975 0.0 26.8542    
cufflinks 7.98554 0.0 22.0105    
cufflinks 6.63559 0.0 18.6175    
cufflinks 3.80547 0.0 11.4512    
cufflinks 0.809858 0.0 2.9105   Low
cufflinks 9.17631 0.0 25.0929    
cufflinks 9.76683 0.0 26.5576    
cufflinks 5.27755 0.0 15.2019    
cufflinks 0.175       Low
cufflinks 5.989     High  
cufflinks 5.076        
cufflinks 0.503       Low
cufflinks 0.777       Low
cufflinks 4.005        
cufflinks 6.308        
cufflinks 2.087        
cufflinks 9.138     High  
cufflinks 4.479        
cufflinks 11.551     High High
cufflinks 3.611        
cufflinks 9.502     High  
cufflinks 5.848        
cufflinks 7.044     High  
cufflinks 9.249     High  
cufflinks 0.862       Low

0 Strain