Gene : Glyma.05G188800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11937//PTHR11937:SF217 - ACTIN Genomic Order:  1888
Name:  ? Glyma.05G188800 Secondary Identifier:  ? PAC:30525393
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G188800 0.5kb upstream 0.5kb upstream 3717 true Chr05: 37453030-37456746 Glycine max
Glyma.05G188800 0.5kb upstream 0.5kb upstream 500 false Chr05: 37456247-37456746 Glycine max
Glyma.05G188800 0.5kb downstream 0.5kb downstream 3717 true Chr05: 37452530-37456246 Glycine max
Glyma.05G188800 0.5kb downstream 0.5kb downstream 500 false Chr05: 37452530-37453029 Glycine max
Glyma.05G188800 1.0kb upstream 1.0kb upstream 4217 true Chr05: 37453030-37457246 Glycine max
Glyma.05G188800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37456247-37457246 Glycine max
Glyma.05G188800 1.0kb downstream 1.0kb downstream 4217 true Chr05: 37452030-37456246 Glycine max
Glyma.05G188800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37452030-37453029 Glycine max
Glyma.05G188800 2.0kb upstream 2.0kb upstream 5217 true Chr05: 37453030-37458246 Glycine max
Glyma.05G188800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37456247-37458246 Glycine max
Glyma.05G188800 2.0kb downstream 2.0kb downstream 5217 true Chr05: 37451030-37456246 Glycine max
Glyma.05G188800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37451030-37453029 Glycine max
Glyma.05G188800 5.0kb upstream 5.0kb upstream 8217 true Chr05: 37453030-37461246 Glycine max
Glyma.05G188800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37456247-37461246 Glycine max
Glyma.05G188800 5.0kb downstream 5.0kb downstream 8217 true Chr05: 37448030-37456246 Glycine max
Glyma.05G188800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37448030-37453029 Glycine max
Glyma.05G188800 10.0kb upstream 10.0kb upstream 13217 true Chr05: 37453030-37466246 Glycine max
Glyma.05G188800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37456247-37466246 Glycine max
Glyma.05G188800 10.0kb downstream 10.0kb downstream 13217 true Chr05: 37443030-37456246 Glycine max
Glyma.05G188800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37443030-37453029 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250183 5265 Fabidae View MSA
124051691 5270 Rosid View MSA
123754059 5271 Pentapetalae View MSA
122775472 5272 Eudicot View MSA
122049993 5273 Angiosperm View MSA
123429016 5275 Viridiplantae View MSA
121350794 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.1922 0.0 36.3054   Low
cufflinks 91.0057 0.0 381.849 High  
cufflinks 17.9283 0.0 61.8846   Low
cufflinks 68.2266 0.0 295.882 High  
cufflinks 79.9156 0.0 315.982 High  
cufflinks 43.5442 0.0 167.499 High  
cufflinks 63.3165 0.0 271.017 High  
cufflinks 113.146 0.0 521.034 High High
cufflinks 51.8517 0.0 207.689 High  
cufflinks 46.668     High High
cufflinks 16.446     High  
cufflinks 10.635     High  
cufflinks 24.694     High  
cufflinks 37.687     High High
cufflinks 26.512     High  
cufflinks 13.925     High  
cufflinks 7.403     High Low
cufflinks 25.825     High  
cufflinks 29.571     High High
cufflinks 12.445     High  
cufflinks 18.499     High  
cufflinks 11.02     High  
cufflinks 13.212     High  
cufflinks 11.16     High  
cufflinks 13.196     High  
cufflinks 7.801     High Low

0 Strain