Gene : Glyma.05G182700 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1827
Name:  ? Glyma.05G182700 Secondary Identifier:  ? PAC:30527385
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G182700 0.5kb upstream 0.5kb upstream 3788 true Chr05: 37046146-37049933 Glycine max
Glyma.05G182700 0.5kb upstream 0.5kb upstream 500 false Chr05: 37049434-37049933 Glycine max
Glyma.05G182700 0.5kb downstream 0.5kb downstream 3788 true Chr05: 37045646-37049433 Glycine max
Glyma.05G182700 0.5kb downstream 0.5kb downstream 500 false Chr05: 37045646-37046145 Glycine max
Glyma.05G182700 1.0kb upstream 1.0kb upstream 4288 true Chr05: 37046146-37050433 Glycine max
Glyma.05G182700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37049434-37050433 Glycine max
Glyma.05G182700 1.0kb downstream 1.0kb downstream 4288 true Chr05: 37045146-37049433 Glycine max
Glyma.05G182700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37045146-37046145 Glycine max
Glyma.05G182700 2.0kb upstream 2.0kb upstream 5288 true Chr05: 37046146-37051433 Glycine max
Glyma.05G182700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37049434-37051433 Glycine max
Glyma.05G182700 2.0kb downstream 2.0kb downstream 5288 true Chr05: 37044146-37049433 Glycine max
Glyma.05G182700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37044146-37046145 Glycine max
Glyma.05G182700 5.0kb upstream 5.0kb upstream 8288 true Chr05: 37046146-37054433 Glycine max
Glyma.05G182700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37049434-37054433 Glycine max
Glyma.05G182700 5.0kb downstream 5.0kb downstream 8288 true Chr05: 37041146-37049433 Glycine max
Glyma.05G182700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37041146-37046145 Glycine max
Glyma.05G182700 10.0kb upstream 10.0kb upstream 13288 true Chr05: 37046146-37059433 Glycine max
Glyma.05G182700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37049434-37059433 Glycine max
Glyma.05G182700 10.0kb downstream 10.0kb downstream 13288 true Chr05: 37036146-37049433 Glycine max
Glyma.05G182700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37036146-37046145 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314844 5265 Fabidae View MSA
124065568 5270 Rosid View MSA
123738247 5271 Pentapetalae View MSA
122787727 5272 Eudicot View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.87609 0.0 14.2126   High
cufflinks 3.5379 0.0 13.1839   High
cufflinks 2.13347 0.0 9.57213    
cufflinks 2.02744 0.0 9.03116    
cufflinks 1.58905 0.0 7.74363    
cufflinks 1.64939 0.0 6.06499    
cufflinks 2.18268 0.0 9.66101    
cufflinks 1.67087 0.0 6.13944    
cufflinks 1.47762 0.0 7.27982   Low
cufflinks 0.695        
cufflinks 0.717        
cufflinks 0.964        
cufflinks 0.527        
cufflinks 0.795        
cufflinks 0.593        
cufflinks 3.399       High
cufflinks 0.176       Low
cufflinks 1.07        
cufflinks 1.421        
cufflinks 4.491       High
cufflinks 0.701        
cufflinks 3.511       High
cufflinks 3.502       High
cufflinks 0.482        
cufflinks 3.621       High
cufflinks 0.433        

0 Strain