Gene : Glyma.05G199900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  1999
Name:  ? Glyma.05G199900 Secondary Identifier:  ? PAC:30523927
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5980 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G199900 0.5kb upstream 0.5kb upstream 3862 true Chr05: 38358495-38362356 Glycine max
Glyma.05G199900 0.5kb upstream 0.5kb upstream 500 false Chr05: 38361857-38362356 Glycine max
Glyma.05G199900 0.5kb downstream 0.5kb downstream 3862 true Chr05: 38357995-38361856 Glycine max
Glyma.05G199900 0.5kb downstream 0.5kb downstream 500 false Chr05: 38357995-38358494 Glycine max
Glyma.05G199900 1.0kb upstream 1.0kb upstream 4362 true Chr05: 38358495-38362856 Glycine max
Glyma.05G199900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38361857-38362856 Glycine max
Glyma.05G199900 1.0kb downstream 1.0kb downstream 4362 true Chr05: 38357495-38361856 Glycine max
Glyma.05G199900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38357495-38358494 Glycine max
Glyma.05G199900 2.0kb upstream 2.0kb upstream 5362 true Chr05: 38358495-38363856 Glycine max
Glyma.05G199900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38361857-38363856 Glycine max
Glyma.05G199900 2.0kb downstream 2.0kb downstream 5362 true Chr05: 38356495-38361856 Glycine max
Glyma.05G199900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38356495-38358494 Glycine max
Glyma.05G199900 5.0kb upstream 5.0kb upstream 8362 true Chr05: 38358495-38366856 Glycine max
Glyma.05G199900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38361857-38366856 Glycine max
Glyma.05G199900 5.0kb downstream 5.0kb downstream 8362 true Chr05: 38353495-38361856 Glycine max
Glyma.05G199900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38353495-38358494 Glycine max
Glyma.05G199900 10.0kb upstream 10.0kb upstream 13362 true Chr05: 38358495-38371856 Glycine max
Glyma.05G199900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38361857-38371856 Glycine max
Glyma.05G199900 10.0kb downstream 10.0kb downstream 13362 true Chr05: 38348495-38361856 Glycine max
Glyma.05G199900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38348495-38358494 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301284 5265 Fabidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.7579 0.0 13.8459    
cufflinks 3.39964 0.0 10.3624    
cufflinks 4.29606 0.0 12.6536    
cufflinks 41.0973 0.0 113.949 High High
cufflinks 8.81723 0.0 24.1101    
cufflinks 3.65406 0.0 10.9952    
cufflinks 2.88936 0.0 8.99822    
cufflinks 58.536 0.0 169.439 High High
cufflinks 10.8269 0.0 29.2216    
cufflinks 11.051     High High
cufflinks 1.141       Low
cufflinks 2.451        
cufflinks 3.94       High
cufflinks 1.467        
cufflinks 0.936       Low
cufflinks 1.622        
cufflinks 3.683       High
cufflinks 1.971        
cufflinks 2.253        
cufflinks 1.766        
cufflinks 1.808        
cufflinks 1.835        
cufflinks 1.423        
cufflinks 1.583        
cufflinks 1.729        
cufflinks 1.494        

0 Strain