Gene : Glyma.05G195600 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31580:SF5 - FILAMENT-LIKE PLANT PROTEIN 3 Genomic Order:  1956
Name:  ? Glyma.05G195600 Secondary Identifier:  ? PAC:30523894
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G195600 0.5kb upstream 0.5kb upstream 5866 true Chr05: 37991080-37996945 Glycine max
Glyma.05G195600 0.5kb upstream 0.5kb upstream 500 false Chr05: 37996446-37996945 Glycine max
Glyma.05G195600 0.5kb downstream 0.5kb downstream 5866 true Chr05: 37990580-37996445 Glycine max
Glyma.05G195600 0.5kb downstream 0.5kb downstream 500 false Chr05: 37990580-37991079 Glycine max
Glyma.05G195600 1.0kb upstream 1.0kb upstream 6366 true Chr05: 37991080-37997445 Glycine max
Glyma.05G195600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37996446-37997445 Glycine max
Glyma.05G195600 1.0kb downstream 1.0kb downstream 6366 true Chr05: 37990080-37996445 Glycine max
Glyma.05G195600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37990080-37991079 Glycine max
Glyma.05G195600 2.0kb upstream 2.0kb upstream 7366 true Chr05: 37991080-37998445 Glycine max
Glyma.05G195600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37996446-37998445 Glycine max
Glyma.05G195600 2.0kb downstream 2.0kb downstream 7366 true Chr05: 37989080-37996445 Glycine max
Glyma.05G195600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37989080-37991079 Glycine max
Glyma.05G195600 5.0kb upstream 5.0kb upstream 10366 true Chr05: 37991080-38001445 Glycine max
Glyma.05G195600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37996446-38001445 Glycine max
Glyma.05G195600 5.0kb downstream 5.0kb downstream 10366 true Chr05: 37986080-37996445 Glycine max
Glyma.05G195600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37986080-37991079 Glycine max
Glyma.05G195600 10.0kb upstream 10.0kb upstream 15366 true Chr05: 37991080-38006445 Glycine max
Glyma.05G195600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37996446-38006445 Glycine max
Glyma.05G195600 10.0kb downstream 10.0kb downstream 15366 true Chr05: 37981080-37996445 Glycine max
Glyma.05G195600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37981080-37991079 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303492 5265 Fabidae View MSA
124071762 5270 Rosid View MSA
123742978 5271 Pentapetalae View MSA
122791145 5272 Eudicot View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.38702 0.0 20.2245    
cufflinks 1.42665 0.0 8.05834   Low
cufflinks 7.94505 0.0 33.5534   High
cufflinks 5.22393 0.0 22.7018    
cufflinks 5.07882 0.0 20.3193    
cufflinks 7.20866 0.0 27.7321    
cufflinks 1.75887 0.0 8.41442   Low
cufflinks 2.8706 0.0 11.8948    
cufflinks 6.42344 0.0 25.4871    
cufflinks 0.299       Low
cufflinks 0.468        
cufflinks 1.481       High
cufflinks 1.397       High
cufflinks 0.709        
cufflinks 1.662       High
cufflinks 0.664        
cufflinks 0.272       Low
cufflinks 1.153        
cufflinks 0.291       Low
cufflinks 0.977        
cufflinks 0.518        
cufflinks 0.846        
cufflinks 0.858        
cufflinks 0.403        
cufflinks 0.773        
cufflinks 0.403        

0 Strain