Gene : Glyma.05G235500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR33077:SF7 - PROTEIN TIFY 6A-RELATED Genomic Order:  2355
Name:  ? Glyma.05G235500 Secondary Identifier:  ? PAC:30524725
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G235500 0.5kb upstream 0.5kb upstream 4386 true Chr05: 41221520-41225905 Glycine max
Glyma.05G235500 0.5kb upstream 0.5kb upstream 500 false Chr05: 41221520-41222019 Glycine max
Glyma.05G235500 0.5kb downstream 0.5kb downstream 4386 true Chr05: 41222020-41226405 Glycine max
Glyma.05G235500 0.5kb downstream 0.5kb downstream 500 false Chr05: 41225906-41226405 Glycine max
Glyma.05G235500 1.0kb upstream 1.0kb upstream 4886 true Chr05: 41221020-41225905 Glycine max
Glyma.05G235500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41221020-41222019 Glycine max
Glyma.05G235500 1.0kb downstream 1.0kb downstream 4886 true Chr05: 41222020-41226905 Glycine max
Glyma.05G235500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41225906-41226905 Glycine max
Glyma.05G235500 2.0kb upstream 2.0kb upstream 5886 true Chr05: 41220020-41225905 Glycine max
Glyma.05G235500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41220020-41222019 Glycine max
Glyma.05G235500 2.0kb downstream 2.0kb downstream 5886 true Chr05: 41222020-41227905 Glycine max
Glyma.05G235500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41225906-41227905 Glycine max
Glyma.05G235500 5.0kb upstream 5.0kb upstream 8886 true Chr05: 41217020-41225905 Glycine max
Glyma.05G235500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41217020-41222019 Glycine max
Glyma.05G235500 5.0kb downstream 5.0kb downstream 8886 true Chr05: 41222020-41230905 Glycine max
Glyma.05G235500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41225906-41230905 Glycine max
Glyma.05G235500 10.0kb upstream 10.0kb upstream 13886 true Chr05: 41212020-41225905 Glycine max
Glyma.05G235500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41212020-41222019 Glycine max
Glyma.05G235500 10.0kb downstream 10.0kb downstream 13886 true Chr05: 41222020-41235905 Glycine max
Glyma.05G235500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41225906-41235905 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307775 5265 Fabidae View MSA
124069468 5270 Rosid View MSA
123746675 5271 Pentapetalae View MSA
122792842 5272 Eudicot View MSA
122042775 5273 Angiosperm View MSA
121351436 5274 Embryophyte View MSA
123382165 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.0367 0.0 167.709 High  
cufflinks 12.8862 0.0 62.788   Low
cufflinks 31.2159 0.0 148.028 High  
cufflinks 10.8712 0.0 54.2768   Low
cufflinks 48.5588 0.0 246.948 High  
cufflinks 55.6577 0.0 293.138 High High
cufflinks 17.6309 0.0 83.363    
cufflinks 29.4192 0.0 139.798 High  
cufflinks 46.2239 0.0 233.654 High  
cufflinks 4.406        
cufflinks 4.651        
cufflinks 1.414        
cufflinks 2.669        
cufflinks 1.86        
cufflinks 5.877     High  
cufflinks 1.269        
cufflinks 10.097     High High
cufflinks 1.862        
cufflinks 1.425        
cufflinks 0.917       Low
cufflinks 6.733     High High
cufflinks 1.14       Low
cufflinks 2.656        
cufflinks 5.937        
cufflinks 0.941       Low
cufflinks 11.664     High High

0 Strain