Gene : Glyma.05G240200 G. max Wm82.a2.v1
Defline:  (1 of 20) PF01823 - MAC/Perforin domain (MACPF) Genomic Order:  2402
Name:  ? Glyma.05G240200 Secondary Identifier:  ? PAC:30526973
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G240200 0.5kb upstream 0.5kb upstream 8549 true Chr05: 41542316-41550864 Glycine max
Glyma.05G240200 0.5kb upstream 0.5kb upstream 500 false Chr05: 41550365-41550864 Glycine max
Glyma.05G240200 0.5kb downstream 0.5kb downstream 8549 true Chr05: 41541816-41550364 Glycine max
Glyma.05G240200 0.5kb downstream 0.5kb downstream 500 false Chr05: 41541816-41542315 Glycine max
Glyma.05G240200 1.0kb upstream 1.0kb upstream 9049 true Chr05: 41542316-41551364 Glycine max
Glyma.05G240200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41550365-41551364 Glycine max
Glyma.05G240200 1.0kb downstream 1.0kb downstream 9049 true Chr05: 41541316-41550364 Glycine max
Glyma.05G240200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41541316-41542315 Glycine max
Glyma.05G240200 2.0kb upstream 2.0kb upstream 10049 true Chr05: 41542316-41552364 Glycine max
Glyma.05G240200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41550365-41552364 Glycine max
Glyma.05G240200 2.0kb downstream 2.0kb downstream 10049 true Chr05: 41540316-41550364 Glycine max
Glyma.05G240200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41540316-41542315 Glycine max
Glyma.05G240200 5.0kb upstream 5.0kb upstream 13049 true Chr05: 41542316-41555364 Glycine max
Glyma.05G240200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41550365-41555364 Glycine max
Glyma.05G240200 5.0kb downstream 5.0kb downstream 13049 true Chr05: 41537316-41550364 Glycine max
Glyma.05G240200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41537316-41542315 Glycine max
Glyma.05G240200 10.0kb upstream 10.0kb upstream 18049 true Chr05: 41542316-41560364 Glycine max
Glyma.05G240200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41550365-41560364 Glycine max
Glyma.05G240200 10.0kb downstream 10.0kb downstream 18049 true Chr05: 41532316-41550364 Glycine max
Glyma.05G240200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41532316-41542315 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303456 5265 Fabidae View MSA
124070099 5270 Rosid View MSA
123749357 5271 Pentapetalae View MSA
122797493 5272 Eudicot View MSA
122048328 5273 Angiosperm View MSA
121310931 5274 Embryophyte View MSA
123348303 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.91176 0.0 28.6675    
cufflinks 2.41393 0.0 7.94285    
cufflinks 8.82878 0.0 34.8647    
cufflinks 4.70605 0.0 19.044    
cufflinks 1.31574 0.0 5.1794    
cufflinks 17.5098 0.0 59.8697   High
cufflinks 0.619689 0.0 2.75224   Low
cufflinks 2.47433 0.0 12.5924    
cufflinks 2.79543 0.0 11.3793    
cufflinks 0.274        
cufflinks 1.279       High
cufflinks 0.707        
cufflinks 0.213        
cufflinks 0.079       Low
cufflinks 0.538        
cufflinks 0.317        
cufflinks 1.549       High
cufflinks 0.25        
cufflinks 0.315        
cufflinks 0.309        
cufflinks 1.495       High
cufflinks 0.344        
cufflinks 0.19        
cufflinks 0.438        
cufflinks 0.283        
cufflinks 0.908        

0 Strain