Gene : Glyma.05G229900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12446:SF14 - PROTEIN LIN-54 HOMOLOG Genomic Order:  2299
Name:  ? Glyma.05G229900 Secondary Identifier:  ? PAC:30524118
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G229900 0.5kb upstream 0.5kb upstream 6959 true Chr05: 40791969-40798927 Glycine max
Glyma.05G229900 0.5kb upstream 0.5kb upstream 500 false Chr05: 40791969-40792468 Glycine max
Glyma.05G229900 0.5kb downstream 0.5kb downstream 6959 true Chr05: 40792469-40799427 Glycine max
Glyma.05G229900 0.5kb downstream 0.5kb downstream 500 false Chr05: 40798928-40799427 Glycine max
Glyma.05G229900 1.0kb upstream 1.0kb upstream 7459 true Chr05: 40791469-40798927 Glycine max
Glyma.05G229900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40791469-40792468 Glycine max
Glyma.05G229900 1.0kb downstream 1.0kb downstream 7459 true Chr05: 40792469-40799927 Glycine max
Glyma.05G229900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40798928-40799927 Glycine max
Glyma.05G229900 2.0kb upstream 2.0kb upstream 8459 true Chr05: 40790469-40798927 Glycine max
Glyma.05G229900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40790469-40792468 Glycine max
Glyma.05G229900 2.0kb downstream 2.0kb downstream 8459 true Chr05: 40792469-40800927 Glycine max
Glyma.05G229900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40798928-40800927 Glycine max
Glyma.05G229900 5.0kb upstream 5.0kb upstream 11459 true Chr05: 40787469-40798927 Glycine max
Glyma.05G229900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40787469-40792468 Glycine max
Glyma.05G229900 5.0kb downstream 5.0kb downstream 11459 true Chr05: 40792469-40803927 Glycine max
Glyma.05G229900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40798928-40803927 Glycine max
Glyma.05G229900 10.0kb upstream 10.0kb upstream 16459 true Chr05: 40782469-40798927 Glycine max
Glyma.05G229900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40782469-40792468 Glycine max
Glyma.05G229900 10.0kb downstream 10.0kb downstream 16459 true Chr05: 40792469-40808927 Glycine max
Glyma.05G229900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40798928-40808927 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254369 5265 Fabidae View MSA
124069206 5270 Rosid View MSA
123746618 5271 Pentapetalae View MSA
122795390 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.18324 0.0 11.934   High
cufflinks 1.94007 0.0 6.14502    
cufflinks 2.72725 0.0 8.21043    
cufflinks 1.81357 0.0 5.78883    
cufflinks 1.22734 0.0 4.13336   Low
cufflinks 1.61233 0.0 5.23619    
cufflinks 1.99181 0.0 6.29842    
cufflinks 1.68002 0.0 5.42582    
cufflinks 1.81789 0.0 5.8147    
cufflinks 0.416       Low
cufflinks 1.272       High
cufflinks 1.003        
cufflinks 0.495       Low
cufflinks 0.557       Low
cufflinks 1.147        
cufflinks 0.853        
cufflinks 0.696        
cufflinks 1.027        
cufflinks 0.933        
cufflinks 0.773        
cufflinks 1.39       High
cufflinks 1.01        
cufflinks 0.83        
cufflinks 1.372       High
cufflinks 0.856        
cufflinks 1.038        

0 Strain