Gene : Glyma.05G233700 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31874:SF1 - CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  2337
Name:  ? Glyma.05G233700 Secondary Identifier:  ? PAC:30526049
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G233700 0.5kb upstream 0.5kb upstream 2330 true Chr05: 41087171-41089500 Glycine max
Glyma.05G233700 0.5kb upstream 0.5kb upstream 500 false Chr05: 41087171-41087670 Glycine max
Glyma.05G233700 0.5kb downstream 0.5kb downstream 2330 true Chr05: 41087671-41090000 Glycine max
Glyma.05G233700 0.5kb downstream 0.5kb downstream 500 false Chr05: 41089501-41090000 Glycine max
Glyma.05G233700 1.0kb upstream 1.0kb upstream 2830 true Chr05: 41086671-41089500 Glycine max
Glyma.05G233700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41086671-41087670 Glycine max
Glyma.05G233700 1.0kb downstream 1.0kb downstream 2830 true Chr05: 41087671-41090500 Glycine max
Glyma.05G233700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41089501-41090500 Glycine max
Glyma.05G233700 2.0kb upstream 2.0kb upstream 3830 true Chr05: 41085671-41089500 Glycine max
Glyma.05G233700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41085671-41087670 Glycine max
Glyma.05G233700 2.0kb downstream 2.0kb downstream 3830 true Chr05: 41087671-41091500 Glycine max
Glyma.05G233700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41089501-41091500 Glycine max
Glyma.05G233700 5.0kb upstream 5.0kb upstream 6830 true Chr05: 41082671-41089500 Glycine max
Glyma.05G233700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41082671-41087670 Glycine max
Glyma.05G233700 5.0kb downstream 5.0kb downstream 6830 true Chr05: 41087671-41094500 Glycine max
Glyma.05G233700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41089501-41094500 Glycine max
Glyma.05G233700 10.0kb upstream 10.0kb upstream 11830 true Chr05: 41077671-41089500 Glycine max
Glyma.05G233700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41077671-41087670 Glycine max
Glyma.05G233700 10.0kb downstream 10.0kb downstream 11830 true Chr05: 41087671-41099500 Glycine max
Glyma.05G233700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41089501-41099500 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316208 5265 Fabidae View MSA
124061495 5270 Rosid View MSA
123743712 5271 Pentapetalae View MSA
122787534 5272 Eudicot View MSA
122046214 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351074 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.0501 0.0 156.17 High High
cufflinks 4.1189 0.0 12.3652    
cufflinks 0.303904 0.0 1.1522    
cufflinks 0.262769 0.0 1.003    
cufflinks 0.144493 0.0 0.56582 Low  
cufflinks 0.112642 0.0 0.445103 Low  
cufflinks 0.00117743 0.0 0.00871054 Low Low
cufflinks 2.81158 0.0 8.89582    
cufflinks 0.237488 0.0 0.911172 Low  
cufflinks 1.987        
cufflinks 0.061        
cufflinks 1.157        
cufflinks 0.009     Low Low
cufflinks 0.007     Low Low
cufflinks 0.237        
cufflinks 29.968     High High
cufflinks 0.008     Low Low
cufflinks 0.875        
cufflinks 6.041        
cufflinks 39.691     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 31.269     High High
cufflinks 12.271     High  
cufflinks 0.041     Low  
cufflinks 32.061     High High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain