Gene : Glyma.05G234900 G. max Wm82.a2.v1
Defline:  (1 of 5) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  2349
Name:  ? Glyma.05G234900 Secondary Identifier:  ? PAC:30527253
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G234900 0.5kb upstream 0.5kb upstream 7129 true Chr05: 41174826-41181954 Glycine max
Glyma.05G234900 0.5kb upstream 0.5kb upstream 500 false Chr05: 41174826-41175325 Glycine max
Glyma.05G234900 0.5kb downstream 0.5kb downstream 7129 true Chr05: 41175326-41182454 Glycine max
Glyma.05G234900 0.5kb downstream 0.5kb downstream 500 false Chr05: 41181955-41182454 Glycine max
Glyma.05G234900 1.0kb upstream 1.0kb upstream 7629 true Chr05: 41174326-41181954 Glycine max
Glyma.05G234900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41174326-41175325 Glycine max
Glyma.05G234900 1.0kb downstream 1.0kb downstream 7629 true Chr05: 41175326-41182954 Glycine max
Glyma.05G234900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41181955-41182954 Glycine max
Glyma.05G234900 2.0kb upstream 2.0kb upstream 8629 true Chr05: 41173326-41181954 Glycine max
Glyma.05G234900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41173326-41175325 Glycine max
Glyma.05G234900 2.0kb downstream 2.0kb downstream 8629 true Chr05: 41175326-41183954 Glycine max
Glyma.05G234900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41181955-41183954 Glycine max
Glyma.05G234900 5.0kb upstream 5.0kb upstream 11629 true Chr05: 41170326-41181954 Glycine max
Glyma.05G234900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41170326-41175325 Glycine max
Glyma.05G234900 5.0kb downstream 5.0kb downstream 11629 true Chr05: 41175326-41186954 Glycine max
Glyma.05G234900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41181955-41186954 Glycine max
Glyma.05G234900 10.0kb upstream 10.0kb upstream 16629 true Chr05: 41165326-41181954 Glycine max
Glyma.05G234900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41165326-41175325 Glycine max
Glyma.05G234900 10.0kb downstream 10.0kb downstream 16629 true Chr05: 41175326-41191954 Glycine max
Glyma.05G234900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41181955-41191954 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307424 5265 Fabidae View MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.68635 0.0 23.1828    
cufflinks 8.95658 0.0 23.9003    
cufflinks 4.48913 0.0 12.3187   Low
cufflinks 14.3069 0.0 38.5096    
cufflinks 14.8661 0.0 40.1142    
cufflinks 5.14004 0.0 13.9647   Low
cufflinks 17.5681 0.0 47.8326   High
cufflinks 12.1259 0.0 32.444    
cufflinks 8.32564 0.0 22.2295    
cufflinks 6.939        
cufflinks 0.777       Low
cufflinks 4.605        
cufflinks 9.428     High High
cufflinks 12.59     High High
cufflinks 1.112       Low
cufflinks 5.758        
cufflinks 2.448        
cufflinks 6.444        
cufflinks 7.745     High  
cufflinks 5.389        
cufflinks 1.47       Low
cufflinks 5.465        
cufflinks 6.567        
cufflinks 1.347       Low
cufflinks 5.512        
cufflinks 2.17        

0 Strain