Gene : Glyma.05G224000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  2240
Name:  ? Glyma.05G224000 Secondary Identifier:  ? PAC:30525257
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G224000 0.5kb upstream 0.5kb upstream 3521 true Chr05: 40300268-40303788 Glycine max
Glyma.05G224000 0.5kb upstream 0.5kb upstream 500 false Chr05: 40303289-40303788 Glycine max
Glyma.05G224000 0.5kb downstream 0.5kb downstream 3521 true Chr05: 40299768-40303288 Glycine max
Glyma.05G224000 0.5kb downstream 0.5kb downstream 500 false Chr05: 40299768-40300267 Glycine max
Glyma.05G224000 1.0kb upstream 1.0kb upstream 4021 true Chr05: 40300268-40304288 Glycine max
Glyma.05G224000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40303289-40304288 Glycine max
Glyma.05G224000 1.0kb downstream 1.0kb downstream 4021 true Chr05: 40299268-40303288 Glycine max
Glyma.05G224000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40299268-40300267 Glycine max
Glyma.05G224000 2.0kb upstream 2.0kb upstream 5021 true Chr05: 40300268-40305288 Glycine max
Glyma.05G224000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40303289-40305288 Glycine max
Glyma.05G224000 2.0kb downstream 2.0kb downstream 5021 true Chr05: 40298268-40303288 Glycine max
Glyma.05G224000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40298268-40300267 Glycine max
Glyma.05G224000 5.0kb upstream 5.0kb upstream 8021 true Chr05: 40300268-40308288 Glycine max
Glyma.05G224000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40303289-40308288 Glycine max
Glyma.05G224000 5.0kb downstream 5.0kb downstream 8021 true Chr05: 40295268-40303288 Glycine max
Glyma.05G224000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40295268-40300267 Glycine max
Glyma.05G224000 10.0kb upstream 10.0kb upstream 13021 true Chr05: 40300268-40313288 Glycine max
Glyma.05G224000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40303289-40313288 Glycine max
Glyma.05G224000 10.0kb downstream 10.0kb downstream 13021 true Chr05: 40290268-40303288 Glycine max
Glyma.05G224000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40290268-40300267 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307206 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.377 0.0 152.348 High  
cufflinks 39.8983 0.0 114.057 High  
cufflinks 31.1718 0.0 86.6396 High  
cufflinks 49.401 0.0 145.293 High  
cufflinks 51.4927 0.0 153.207 High  
cufflinks 22.4722 0.0 60.9989   Low
cufflinks 96.0463 0.0 319.037 High High
cufflinks 39.6675 0.0 113.353 High  
cufflinks 41.5674 0.0 119.774 High  
cufflinks 54.264     High High
cufflinks 29.027     High  
cufflinks 34.524     High  
cufflinks 37.441     High  
cufflinks 49.537     High  
cufflinks 51.398     High  
cufflinks 30.038     High  
cufflinks 75.195     High High
cufflinks 36.633     High  
cufflinks 37.866     High  
cufflinks 25.711     High Low
cufflinks 33.196     High  
cufflinks 26.645     High Low
cufflinks 29.375     High  
cufflinks 32.34     High  
cufflinks 26.12     High Low
cufflinks 61.717     High High

0 Strain