Gene : Glyma.05G227400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR23406:SF26 - NADP-DEPENDENT MALIC ENZYME 1 Genomic Order:  2274
Name:  ? Glyma.05G227400 Secondary Identifier:  ? PAC:30527332
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLUCONEO-PWY Glycine max pathologic  
Gmax PWY-241 Glycine max pathologic  
Gmax PWY-7117 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G227400 0.5kb upstream 0.5kb upstream 6185 true Chr05: 40556860-40563044 Glycine max
Glyma.05G227400 0.5kb upstream 0.5kb upstream 500 false Chr05: 40562545-40563044 Glycine max
Glyma.05G227400 0.5kb downstream 0.5kb downstream 6185 true Chr05: 40556360-40562544 Glycine max
Glyma.05G227400 0.5kb downstream 0.5kb downstream 500 false Chr05: 40556360-40556859 Glycine max
Glyma.05G227400 1.0kb upstream 1.0kb upstream 6685 true Chr05: 40556860-40563544 Glycine max
Glyma.05G227400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40562545-40563544 Glycine max
Glyma.05G227400 1.0kb downstream 1.0kb downstream 6685 true Chr05: 40555860-40562544 Glycine max
Glyma.05G227400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40555860-40556859 Glycine max
Glyma.05G227400 2.0kb upstream 2.0kb upstream 7685 true Chr05: 40556860-40564544 Glycine max
Glyma.05G227400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40562545-40564544 Glycine max
Glyma.05G227400 2.0kb downstream 2.0kb downstream 7685 true Chr05: 40554860-40562544 Glycine max
Glyma.05G227400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40554860-40556859 Glycine max
Glyma.05G227400 5.0kb upstream 5.0kb upstream 10685 true Chr05: 40556860-40567544 Glycine max
Glyma.05G227400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40562545-40567544 Glycine max
Glyma.05G227400 5.0kb downstream 5.0kb downstream 10685 true Chr05: 40551860-40562544 Glycine max
Glyma.05G227400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40551860-40556859 Glycine max
Glyma.05G227400 10.0kb upstream 10.0kb upstream 15685 true Chr05: 40556860-40572544 Glycine max
Glyma.05G227400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40562545-40572544 Glycine max
Glyma.05G227400 10.0kb downstream 10.0kb downstream 15685 true Chr05: 40546860-40562544 Glycine max
Glyma.05G227400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40546860-40556859 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312782 5265 Fabidae View MSA
124068705 5270 Rosid View MSA
123751350 5271 Pentapetalae View MSA
122794130 5272 Eudicot View MSA
122042224 5273 Angiosperm View MSA
121345569 5274 Embryophyte View MSA
123428715 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0453 0.0 40.8466    
cufflinks 6.20127 0.0 22.4988    
cufflinks 3.90416 0.0 13.6298    
cufflinks 2.15245 0.0 10.547   Low
cufflinks 13.8651 0.0 52.4351   High
cufflinks 6.76719 0.0 24.2545    
cufflinks 14.547 0.0 54.8192   High
cufflinks 4.71724 0.0 18.2049    
cufflinks 8.11668 0.0 28.3343    
cufflinks 1.442        
cufflinks 0.763        
cufflinks 0.816        
cufflinks 1.853       High
cufflinks 1.028        
cufflinks 0.242       Low
cufflinks 0.617        
cufflinks 0.984        
cufflinks 1.109        
cufflinks 0.558        
cufflinks 0.778        
cufflinks 1.46        
cufflinks 0.851        
cufflinks 0.494       Low
cufflinks 1.151        
cufflinks 0.677        
cufflinks 2.927       High

0 Strain