Gene : Glyma.05G218100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13215:SF6 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP Genomic Order:  2181
Name:  ? Glyma.05G218100 Secondary Identifier:  ? PAC:30523714
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G218100 0.5kb upstream 0.5kb upstream 2733 true Chr05: 39806565-39809297 Glycine max
Glyma.05G218100 0.5kb upstream 0.5kb upstream 500 false Chr05: 39806565-39807064 Glycine max
Glyma.05G218100 0.5kb downstream 0.5kb downstream 2733 true Chr05: 39807065-39809797 Glycine max
Glyma.05G218100 0.5kb downstream 0.5kb downstream 500 false Chr05: 39809298-39809797 Glycine max
Glyma.05G218100 1.0kb upstream 1.0kb upstream 3233 true Chr05: 39806065-39809297 Glycine max
Glyma.05G218100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39806065-39807064 Glycine max
Glyma.05G218100 1.0kb downstream 1.0kb downstream 3233 true Chr05: 39807065-39810297 Glycine max
Glyma.05G218100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39809298-39810297 Glycine max
Glyma.05G218100 2.0kb upstream 2.0kb upstream 4233 true Chr05: 39805065-39809297 Glycine max
Glyma.05G218100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39805065-39807064 Glycine max
Glyma.05G218100 2.0kb downstream 2.0kb downstream 4233 true Chr05: 39807065-39811297 Glycine max
Glyma.05G218100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39809298-39811297 Glycine max
Glyma.05G218100 5.0kb upstream 5.0kb upstream 7233 true Chr05: 39802065-39809297 Glycine max
Glyma.05G218100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39802065-39807064 Glycine max
Glyma.05G218100 5.0kb downstream 5.0kb downstream 7233 true Chr05: 39807065-39814297 Glycine max
Glyma.05G218100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39809298-39814297 Glycine max
Glyma.05G218100 10.0kb upstream 10.0kb upstream 12233 true Chr05: 39797065-39809297 Glycine max
Glyma.05G218100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39797065-39807064 Glycine max
Glyma.05G218100 10.0kb downstream 10.0kb downstream 12233 true Chr05: 39807065-39819297 Glycine max
Glyma.05G218100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39809298-39819297 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308178 5265 Fabidae View MSA
124066656 5270 Rosid View MSA
123749288 5271 Pentapetalae View MSA
122790546 5272 Eudicot View MSA
122043186 5273 Angiosperm View MSA
121348005 5274 Embryophyte View MSA
123427584 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.64988 0.0 19.9771   Low
cufflinks 13.9382 0.0 38.4537    
cufflinks 8.49542 0.0 24.6957    
cufflinks 17.5319 0.0 47.5306    
cufflinks 9.91357 0.0 28.2922    
cufflinks 10.4597 0.0 29.7217    
cufflinks 23.8732 0.0 63.9766 High High
cufflinks 13.8307 0.0 38.0512    
cufflinks 9.89578 0.0 28.2436    
cufflinks 4.628        
cufflinks 0.944       Low
cufflinks 5.645       High
cufflinks 4.12        
cufflinks 4.822        
cufflinks 1.974        
cufflinks 3.66        
cufflinks 1.514       Low
cufflinks 4.67        
cufflinks 5.428       High
cufflinks 3.097        
cufflinks 1.51       Low
cufflinks 3.528        
cufflinks 3.396        
cufflinks 1.359       Low
cufflinks 3.422        
cufflinks 2.157        

0 Strain